- Query all Galaxy resources with the search function in the top masthead
- Galaxy Help
- Mailing Lists
- Video Help
- Galaxy Biostars: retired
Using Galaxy FAQs
- Getting an account at Galaxy Main (https://usegalaxy.org)
- Loading Data
- Downloading Data
- Finding tools
- Where is the tool help?
- Job details: bug, info, and other useful dataset icons
Datasets and Histories
- Understanding the Analysis History
- Managing Datasets
- Datasets and how jobs execute
- More about moving Datasets and Histories (external GVL blog)
- My history is missing! Good news, it probably isn't.
- A history was shared with me, where can I find it?
- The account usage quota seems incorrect
- Checking for active vs deleted vs permanently deleted (purged) datasets and histories
- Reset password or Change email, username, password
- My job ended with an error. What can I do?
- Reporting Usage Issues or Software bugs
- Known Issues - Galaxy
- Known Issues - Main https://usegalaxy.org
- Known Issues - Tools-devteam
- Known Issues - Tools-iuc
Getting inputs right
- How to format fastq data for tools that require .fastqsanger format?
- Understanding compressed fastq data (fastq.gz)
- Reformatting fastq data loaded with NCBI SRA
- Format help for Tabular/BED/Interval Datasets
- Common datatypes explained
- The tool I'm using does not recognize any input datasets. Why?
- How do I find, adjust, and/or correct metadata?
- Tool error? Try Sorting Your Inputs
- Preparing and using a Custom Reference Genome or Build
- Mismatched Chromosome identifiers (and how to avoid them)
- Extended Help for Differential Expression Analysis Tools