- Query all Galaxy resources with the search function in the top masthead
- Q&A at Galaxy Biostars
- Claim your Biostars account
- Mailing Lists
- Video Help
Using Galaxy FAQs
- Getting an account at Galaxy Main (http://usegalaxy.org)
- Loading Data
- Downloading Data
- Finding tools
- Where is the tool help?
- Job details: bug, info, and other useful dataset icons
Datasets and Histories
- Scientific user guide to running a personal Galaxy server
- Why develop tools for Galaxy?
- Galaxy Tricks
- Commercial Galaxy Support
- My history is missing! Good news, it probably isn't.
- The account usage quota seems incorrect
- Checking for active vs deleted vs permanently deleted (purged) datasets and histories
- My job ended with an error. What can I do?
- Troubleshoot an error
- Known Tool Issues (check here first if a tool failed)
- Known Data Issues
- Galaxy Github issue board
Getting inputs right
- How to format fastq data for tools that require .fastqsanger format?
- Understanding compressed fastq data (fastq.gz)
- Reformatting fastq data loaded with NCBI SRA
- Format help for Tabular/BED/Interval Datasets
- Common datatypes explained
- The tool I'm using does not recognize any input datasets. Why?
- How do I find, adjust, and/or correct metadata?
- Preparing and using a Custom Reference Genome or Build
- Tool error? Try Sorting Your Inputs
- Mismatched Chromosome identifiers