Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy
Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows
Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project
Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project
Accessibility in Galaxy 23.0 and beyond
Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general
Building a distributed compute network across Europe
The Work Package 3 of the EuroScienceGateway project
The Climate community within the EuroScienceGateway project
Climate Community Strategy for Work Package 5
Events
The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.
Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy
Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.
Feb 9Galaxy Community Call: 23.0 Release Testing Outcomes
A forum to share updates and discuss community-wide topics
Feb 9microGalaxy Community Call
microGalaxy is a communities of practice focusing on microbial analysis with Galaxy
A forum to share updates and discuss community-wide topics
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.