Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
BioNT delivered its first training workshop, A practical introduction to bioinformatics and RNA-seq using Galaxy, from 4th to 8th of September, 2023. This post reports this workshop's organisation, the applicants and participants, as well as their feedback about it.
Galaxy having grown up and matured - happy 18th birthday!
Schiml et al. present three integrative meta-omics workflows, developed in Galaxy, for enhanced analysis and integration of metagenomics, metatranscriptomics, and metaproteomics, combined with a newly developed web-application, ViMO (Visualizer for Meta-Omics) to analyse metabolisms in complex microbial communities.
Galaxy Admin Training from April 17th to 21st in Ghent, Belgium.
Enabling astronomers to search and download data from IVOA-compliant archives directly within Galaxy
Oct 4 - Oct 6European Galaxy Days (EGD)
European Galaxy Community meeting in Autumn
microGalaxy is a communities of practice focusing on microbial data analysis with Galaxy
Oct 9 - Oct 13Workshop on Single-cell Data Analysis with Galaxy
In this workshop, scientists learn single-cell data analysis using Galaxy. There is no requirement of any programming skills.
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.