Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

Evaluation of the current usage and future needs of Galaxy for microbial data analysis - We Need Your Help!

The microGalaxy community of practice would like to learn more about use-cases where Galaxy was beneficial, and also the barriers that prevent researchers from using Galaxy. The aim is to collectively find solutions to improve user experience and reduce barriers. To this end, we are launching a survey to reach out to, and learn from, the microbial research community.

New Paper "Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart"

Siatra et al. have used the European Galaxy server to identify cell populations capable of cardiac regeneration that we will be able to trace and monitor

Effortlessly navigate your Galaxy history with enhanced search options

Data searchability in the Galaxy History panel has been taken to new levels with the advanced search options that allow users to not only find items with more ease, but also find relations within items in their history.

Enjoy a much faster user interface

Following up on our modernization efforts, we now introduce a single top-router written in Vue, which brings all our Vue components together in a seamless user experience, dramatically reducing the number of required page reloads when navigating the Galaxy user interface.

Galaxy Mentor Network: Reset

We launched the Galaxy Mentor Network one year ago with the idea to onboard new members in the community. Now, one year later, we realize that we failed. We still believe in the power that the Galaxy Mentor Network, and, in that spirit, we would like to relaunch the Galaxy Mentor Network with a new matching process.

Events

Apr 19 - Apr 20Imaging in Galaxy

Workshop 'BioImaging and the European Open Science Cloud' organised by Euro-BioImaging ERIC in collaboration with EOSC-Life

May 22 - May 26GTN Smörgåsbord 2023

We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!

Mar 30Galaxy Metabolomics Community Call

A forum to share updates and discuss community-wide topics.

Apr 13Galaxy Community Call: AnVIL Project

A forum to share updates and discuss community-wide topics

May 4Galaxy Community Call: Galaxy for Cancer

A forum to share updates and discuss community-wide topics

FTP Upload

For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

As an example, a screenshot of the configuration settings for FileZilla can be found here.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the Bioinformatics group of the department of Pathology.

For any questions regarding this Galaxy server, please contact us.

Visit the team page