For the mapping of non-contiguous transcripts, this program was developed. STAR's speed and reliability have been proven. The mapper was recently updated on this server and several often used reference genomes are already online.
If you want to map RNA data from RNA-seq or CLIP experiments, consider using STAR.
If the reference genome of your organism or the gene-model is not yet available, let us know and we will add it, as soon as possible.
Try STAR by clicking here.