UseGalaxy.eu Tool Updates for 2020-01-25
On 2020-01-25, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #177
Statistics
- scipy_sparse was updated to a84e6ffd3735
Assembly
- colibread_lordec was updated to 74878f127e47
- miniasm was updated to 2dcd07f40204
hca_sc_utils_viz
- droplet_barcode_plot was updated to 04f32429dcf2
- dropletutils_empty_drops was updated to da189ce4016b
- salmon_kallisto_mtx_to_10x was updated to 60fa6080f86f
Convert Formats
- gfa_to_fa was updated to 8e9d604e92f4
Gemini
- gemini_actionable_mutations was updated to f62ed0e84665
- gemini_amend was updated to b8b120a4cef7
- gemini_annotate was updated to 567837ca5f33
- gemini_burden was updated to 12112e6e5ea4
- gemini_db_info was updated to 496124e09f82
- gemini_fusions was updated to 8a68d9a33023
- gemini_gene_wise was updated to 4f55668547fc
- gemini_inheritance was updated to 162a9d4a3bdc
- gemini_interactions was updated to ce6db5020339
- gemini_load was updated to 64132aa2d62a
- gemini_lof_sieve was updated to 295814260d95
- gemini_pathways was updated to d5ec6384a3be
- gemini_qc was updated to 137a3e07062e
- gemini_query was updated to 840fb4850be3
- gemini_roh was updated to 60f477e3c79b
- gemini_set_somatic was updated to 3208dd1dbfe2
- gemini_stats was updated to 73b103195e2a
- gemini_windower was updated to c15b615cdc3b
hca_sc_sccaf_tools
- sccaf_regress_out was updated to 5ef0610e9f50
hca_sc_scanpy_tools
- anndata_ops was updated to ec4604919de3
Phylogenetics
- phyml was updated to 034f76ead49a
Machine Learning
- keras_batch_models was updated to 3814a92c1416
- keras_model_builder was updated to c51571d0a0b1
- keras_model_config was updated to 94d91334c787
- keras_train_and_eval was updated to 8ddb3557710d
- ml_visualization_ex was updated to c7655b5a94af
- model_prediction was updated to b237f27a8afc
- sklearn_build_pipeline was updated to 840f29aad145
- sklearn_clf_metrics was updated to e54382561bd4
- sklearn_data_preprocess was updated to 1b5cd2d16fb1
- sklearn_discriminant_classifier was updated to d3e99d3df1ca
- sklearn_ensemble was updated to 1a53edc4b438
- sklearn_estimator_attributes was updated to 89deaf399ff7
- sklearn_feature_selection was updated to 07b34d5284f6
- sklearn_fitted_model_eval was updated to 4a1cd790e323
- sklearn_generalized_linear was updated to 91c4e3331208
- sklearn_model_fit was updated to fe4e36598917
- sklearn_model_validation was updated to 805194c3cdfb
- sklearn_nn_classifier was updated to aa83e7e3c398
- sklearn_numeric_clustering was updated to 1dd433d2c92c
- sklearn_pairwise_metrics was updated to f24deab884d0
- sklearn_regression_metrics was updated to f04a2405f3fe
- sklearn_sample_generator was updated to ab2c393080f9
- sklearn_searchcv was updated to 25ab6b4e376e
- sklearn_stacking_ensemble_models was updated to 253b3aaf0d91
- sklearn_svm_classifier was updated to f9639b488779
- sklearn_train_test_eval was updated to bde62c243b7e
- sklearn_train_test_split was updated to e8639f65c883
Multiple Alignments
- mummer_delta_filter was updated to abe34706eddf
- mummer_dnadiff was updated to 315c678562d2
- mummer_mummer was updated to fc143c06a842
- mummer_mummerplot was updated to c0cedc12fcc5
- mummer_nucmer was updated to 5b0b49b5421c
- mummer_show_coords was updated to b8e2c2f95d26
Nanopore
- nanoplot was updated to edbb6c5028f5
Graph/Display Data
- circos was updated to a64dc31ab7f2
- pathview was updated to 03c13085aecc
HiCExplorer
- schicexplorer_schicadjustmatrix was updated to fad89d56674a
- schicexplorer_schiccluster was updated to a532cbac217a
- schicexplorer_schicclustercompartments was updated to 5426f006d7ed
- schicexplorer_schicclusterminhash was updated to 1c2e79e9311a
- schicexplorer_schicclustersvl was updated to 7cbd84a1f985
- schicexplorer_schicconsensusmatrices was updated to 49e3fe550e7e
- schicexplorer_schicdemultiplex was updated to e59d83af97a1
- schicexplorer_schicinfo was updated to 35c211c5146d
- schicexplorer_schicmergematrixbins was updated to 18ac7f83ae0e
- schicexplorer_schicmergetomcool was updated to 45a38d0a0ee6
- schicexplorer_schicnormalize was updated to 6eda3d3b562d
- schicexplorer_schicplotclusterprofiles was updated to 2427c6d8cdd0
- schicexplorer_schicplotconsensusmatrices was updated to 1a1e085c352e
- schicexplorer_schicqualitycontrol was updated to 061a8c076eb1
hca_sc_seurat_tools
- seurat_find_neighbours was updated to 4fff8ad1c76d
Variant Calling
- vcf2tsv was updated to 285060661b45
- vcfaddinfo was updated to 6ea73d6151ec
- vcfallelicprimitives was updated to 57a16b310fe8
- vcfannotate was updated to 01e0321aca98
- vcfannotategenotypes was updated to 84959112d9a6
- vcfbedintersect was updated to aea8e90ad788
- vcfbreakcreatemulti was updated to 9fd5d91eb91b
- vcfcheck was updated to 2968c6916579
- vcfcombine was updated to 1f0ba67cc85a
- vcfcommonsamples was updated to f1852ecef841
- vcfdistance was updated to 5822b40f3037
- vcffilter was updated to fa24bf0598f4
- vcffixup was updated to 11f62f071125
- vcfflatten was updated to f285aa6bdcfb
- vcfgeno2haplo was updated to a3dea556218d
- vcfgenotypes was updated to a60ae8af21a1
- vcfhethom was updated to 8254e0fe7358
- vcfleftalign was updated to 29f9b782727e
- vcfprimers was updated to 17096387c0e6
- vcfrandomsample was updated to 6257ee3b50d3
- vcfselectsamples was updated to 2ba3b87f904f
- vcfsort was updated to f0580efedada
- vcfvcfintersect was updated to 166c4f50525f
RNA Analysis
- heinz was updated to 704c401e0afb
- graphprot_predict_profile was updated to 20429f4c1b95
ChemicalToolBox
- gmx_em was updated to 476cdf677b03
- gmx_merge_topology_files was updated to 8ddd75c21cbd
- gmx_setup was updated to ccdf0b30a422
- gmx_sim was updated to b1061cc2653a
- gmx_solvate was updated to 3c77d66e7fe5
RAD-seq
- stacks2_cstacks was updated to c541e62d6c56
Annotation
- repeat_masker was updated to ade773848c3d
- tbprofiler was updated to 200c378d85f3
SAM/BAM
- samtools_view was updated to b01db2684fa5