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Publications

2024

  1. Tangaro,M.A. et al. (2024) Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures. NAR Genomics and Bioinformatics, 2024, 6(4), lqae140. DOI: 10.1093/nargab/lqae140.

  2. The Galaxy Community (2024) The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update Nucleic Acids Research, 2024, 52(W1), pp. W83–W94. DOI: 10.1093/nar/gkae410.

2023

  1. Tangaro,M.A. et al. (2023) The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science. Communications in Computer and Information Science, 2023, 1668 CCIS, pp. 179–191. DOI: 10.1007/978-3-031-25380-5_14.

  2. Mandreoli,P. et al. (2023) Using “Galaxy-rCASC”: A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis. Methods in Molecular Biology, 2023, 2584, pp. 311–335. DOI: 10.1007/978-1-0716-2756-3_16.

2022

  1. The Galaxy Community (2024) The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research, 2022, 50(W1), pp. W345–W351. DOI: 10.1093/nar/gkac247.

2021

  1. Tangaro,M.A. et al. (2021) Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinformatics, 2021, 22, 544. DOI: 10.1186/s12859-021-04401-3.

  2. Zambelli,F. et al. (2021) aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals. Journal of Molecular Biology, 2021, 433(11), 166829. DOI: 10.1016/j.jmb.2021.166829.

2020

  1. Chiara,M. et al. (2020) VINYL: Variant prIoritizatioN by survivaL analysis. Bioinformatics, 2020, 36(24), pp. 5590–5599. DOI: 10.1093/bioinformatics/btaa1067.

  2. Chiara,M. et al. (2020) CorGAT: A tool for the functional annotation of SARS-CoV-2 genomes. Bioinformatics, 2020, 36(22-23), pp. 5522–5523. DOI: 10.1093/bioinformatics/btaa1047.

  3. Castrignanò,T. et al. (2020) ELIXIR-IT HPC@CINECA: High performance computing resources for the bioinformatics community. BMC Bioinformatics, 2020, 21, 352. DOI: 10.1186/s12859-020-03565-8.

  4. Tangaro,M.A. et al. (2020) Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures. GigaScience, 2020, 9(4), giaa033. DOI: 10.1093/gigascience/giaa033.

2019

  1. Zanardi,N. et al. (2019) PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data. Scientific Reports, 2019, 9(1), 17550. DOI: 10.1038/s41598-019-53155-9.