RNA-seq Analysis using Galaxy

An Introduction to RNA-seq Analysis (Human, Mouse) using Galaxy at University of Isfahan (in Persian)

28th October 2020, 30th October 2020

Description:

The Freiburg Galaxy team and University of Isfahan organize an online workshop in Persian to demonstrate how Galaxy can be used for RNA-seq data analysis.

Agenda:

• An Introduction to NGS
• An Introduction to RNA-sequencing (Experimental and In silico)
• The applications of RNA-seq
• RNA-seq databases
• Statistical principals of gene expression analysis: p-value, Log2FC, FPKM
• Introduction to Galaxy
• Case study I: Human and Mouse RNA-seq data analysis using HISAT2, FeatureCounts and Limma tools in order to achieve Differential Expressed Genes (DEGs)
• Case study II:Investigation of downstream pathways relating to DEGs: GO and Pathway Analyses

Target audience: Students (BSc, MSc, or PHD) of biology, medicine, medical engineering and computer sciences clinical laboratory technician.

Speakers:

• Maryam Kay, Ph.D.
• Fariba Dehghanian, Assistant Professor, Department of Cell and Molecular Biology & Microbiology, University of Isfahan
• Alireza Khanteymoori, Postdoc Researcher at the University of Freiburg and member of the European Galaxy team.

Organizers

{% assign extra_organizers = "galaxy-freiburg|galaxy-europe" | split: "|" %} {% include sponsors.html supporters=extra_organizers hidetitle=true %}