How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

DataPLANT Presented Cloud Architecture and ARC RO-Crates at the 1st Open Access Workshop held in Göttingen

Freiburg Galaxy team recently joined experts in Göttingen for the 1st Open Architecture Workshop to help shape the future technical foundations of the National Research Data Infrastructure (NFDI). The team presented their cloud-oriented architecture and shared critical insights from the PLANT DataHUB regarding scalable storage and the "Software as a Service" approach. Read the full report to discover how collaborative efforts and common building blocks, such as ARC RO-crates, are driving the development of a robust and interoperable data ecosystem.

Galaxy Powers FAIR Data: The BERD@NFDI B-Plan Use Case Shines at EOSC Symposium 2025

At the EOSC Symposium 2025, a standout example was the BERD@NFDI B-Plan use case, a project demonstrating how the Galaxy Europe platform provides the analytical engine to transform complex, unstructured planning data into FAIR research assets for the entire European research community.

Galaxy Tool Wrapping: Introducing the New Tool Developers SIG

Join the newly formed Tool Developers Special Interest Group (SIG) to collaborate on high-quality tool maintenance and standardize best practices across the Galaxy ecosystem. This initiative offers a dedicated space for mentorship, peer review, and community-driven development for developers of all experience levels.

The Intergalactic Workflow Commission

Try Galaxy workflows with test data

From Plume to Bloom: Data Terra and Galaxy illuminated extreme event observation at EOSC Symposium 2025

Data Terra, the EOSC thematic node for the environment, demonstrated how the Galaxy platform accelerates environmental research through interoperable, FAIR data workflows within the EOSC Federation. From satellite plumes to ecosystem blooms.

Events

Dec 3Introduction to Galaxy, the Open-Source Platform for FAIR Data Analysis (in German)

Are you new to e-science? Do you want to learn ways to analyse your material with digital tools from your browser without any programming skills? Do you want to get an idea of research data management? Register for our introduction at the HeFDI Data School to find out more

Jan 9 - Jan 14PAG 33 Plant and Animal Genome Conference

Join PAG 33 to explore breakthroughs in plant and animal genomics and bioinformatics.

Mar 9 - Mar 13Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy