NFDI4BIOIMAGE is a nationwide community of researchers, imaging specialists and data experts who work with biological image data. We support anyone who generates, analyses or manages microscopy and bioimaging data. Our aim is to make imaging data easier to find, access, reuse and share by providing practical tools, clear guidance and hands on training. We collaborate closely with laboratories and research communities across Germany to understand their needs and develop solutions that help with real everyday challenges. Whether you are building new workflows, exploring advanced analysis methods or improving your data management, NFDI4BIOIMAGE offers support, expertise and a welcoming network.
31 contributions
Contributors (2)
News (22)
Integration of the Hugging Face Hub with Galaxy
Galaxy users can now browse the Hugging Face Hub as a repository source, import models straight into their histories, and feed them into tools. A step-by-step example shows how to pull models from the Hugging Face Hub into Galaxy and then using the existing DocLayout-YOLO tool for document layout segmentation.
European BioHackathon 2025 – FAIR Image Analysis in Galaxy (Project 9)
One framework, one workflow, many communities: Freiburg Galaxy team at EOSC Symposium 2025
Galaxy showed how 'one framework, one workflow, many communities' can run cross-disciplinary imaging analyses on the emerging EOSC Federation. Here is what we presented, with slides and video.
New Galaxy Tool: BiaPy – Deep Learning for Bioimage Analysis in Galaxy
Perform advanced deep-learning-based workflows for image segmentation, classification, and reconstruction
Galaxy at the Conference on Research Data Infrastructure (CoRDI) 2025 in Aachen
Galactic views on the Conference on Research Data Infrastructure
🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.
Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.
Voronoi segmentation for Astronomy
Dividing the sky images in regions that include individual astronomical objects.
Vizgen Postprocessing Tool (VPT) now available in Galaxy
Reprocess and refine the single-cell results of MERSCOPE experiments
Effortless data labeling with AI support from YOLO and Segment Anything on Galaxy Europe!
Use AnyLabeling in the European Galaxy Server as an interactive tool
Lights, Camera... Hacking! Highlights from the Galaxy Imaging Hackathon 2025
Three days of collaborative hacking, coffee-fueled brainstorming, and community-powered innovation—Galaxy Imaging is growing, and so are its FAIR tools!
BellaVista interactive tool now available in Galaxy
Open-Source Visualization for Imaging-Based Spatial Transcriptomics
The BioImage Model Zoo meets the Galaxy platform
New tool to run AI models for image analysis
Highlights of the NFDI4Bioimage All-Hands-Meeting!
Progress, possibilities, and the future: Our journey at the NFDI4Bioimage continues!
CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization
CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome.
Biohackathon Europe 2024: A successful collaborative effort to develop workflows for FAIR Image Analysis using Galaxy
At BioHackathon Europe 2024 in Barcelona, a group of FAIR enthusiasts work on development of image analysis workflows using the Galaxy.
Report from the Helmholtz Metadata Collaboration Conference (HMC) 2024
Galaxy imaging and RDM workflows were presented at the HMC 2024
Achievements during the ’Image Analysis in Galaxy’ hackathon
Find out the new features that are now available for image analysts!
CellProfiler now available in Galaxy as an interactive tool too
Use CellProfiler as if you were working in your local workstation
Napari: A fast, interactive, multi-dimensional image viewer on Galaxy!
Use Napari in the European Galaxy Server as an interactive tool
Galaxy goes Research Data Infrastructure
The Galaxy Europe Team active at NFDI's CoRDI (Karlsruhe, Germany, Sep 12th to 14th)
Events (9)
19th OME Community Meeting 2026
Join us at the 19th OME Community Meeting for a workshop on image analysis in Galaxy and the OMERO integration.
Euro-BioImaging Image Data Community Days 2026
Join us at the Euro-BioImaging Image Data Community Days 2026 for a talk and workshop on image analysis in Galaxy.
LOVE DATA week with intro to Galaxy & GTN
Celebrate international LOVE DATA week with a series of free online and in person events focused on RDM, including a session on Galaxy and the GTN.
The European Galaxy team at Postdoc Appreciation Week Germany 2025 (Online event)
Discover how the Galaxy Platform is making data analysis accessible to researchers from all backgrounds. Join a live demo and explore real-world use cases at our webinar during the Postdoc Appreciation Week 2025.
Galaxy @ CoRDI 2025
Do you want to learn how Galaxy can help you with your research and reproducible research data management? Join us at CoRDI!
Galaxy Imaging Hackathon 2025
NFDI4BIOIMAGE All-Hands Meeting 2025
Hackathon Image Analysis in Galaxy
This hackathon addresses the improvement of Galaxy for image analysis