Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention policy before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

Training

If you are organising a training session, you can book computing resources using the TIaaS system

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

Citation

Have you used the French Galaxy server for your data analysis?



Team

The French Galaxy team is distributed across different cities in France.



Communities: domain-centric Galaxy subdomains

Microbiology

Whether you're working with microbiome samples or bacterial isolates, long or short reads, shotgun or 16S sequencing, genomics, transcriptomics, proteomics, metabolomics, or integrative multi-omics analysis—this is the place for you!

Single-cell

Access Single Cell Omics analysis tutorials, tools, and workflows that let you analyse data without programming experience or private infrastructure.

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Covid19

Variant analysis, consensus using community approved workflows and datasets

Metabarcoding

With the following tools and pipelines: FROGS, QIIME, Mothur, Obitools, dada2, PICRUSt

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

MNHN

Tools from the French Muséum National d'Histoire Naturelle

News

SURF Research Cloud as infrastructure for Galaxy in The Netherlands

Dutch scientists can now use Galaxy in secure environments.

Enhancing Scientific Training: The Galaxy Training Network’s Role in the ELIXIR Training Life-Cycle

In the rapidly evolving landscape of data science, continuous learning and skill development are crucial

New Interactive Tools Panel in Galaxy 25.0

New panel allocated for interactive tools on Galaxy

🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.

Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.

RSpace is now integrated with Galaxy

Analyze data with Galaxy, keep it under control on RSpace

Events

Jul 8 - Jul 9The first Galaxy Tool Development Workshop in Freiburg, Germany

Learn to build and publish Galaxy tools in our first hands-on workshop in Freiburg.

Jul 10Upcoming Online Talk at Imperial College London: Discover Galaxy – From Analysis to FAIR Data Management

Learn how Galaxy supports research data analysis and FAIR data management in this online talk hosted by Imperial College London.