Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention policy before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Microbiology

Whether you're working with microbiome samples or bacterial isolates, long or short reads, shotgun or 16S sequencing, genomics, transcriptomics, proteomics, metabolomics, or integrative multi-omics analysis—this is the place for you!

microGalaxy

Microbiology

Single-cell

Access Single Cell Omics analysis tutorials, tools, and workflows that let you analyse data without programming experience or private infrastructure.

Workflow4Metabolomics

Single-cell

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

Covid19

Variant analysis, consensus using community approved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines: FROGS, QIIME, Mothur, Obitools, dada2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

Galaxy Workshop for Humanities and Social Sciences in Freiburg

Introducing Galaxy and Digital Humanities on site

JupyterGIS: Collaborative Geospatial Analysis in the Cloud

Explore how JupyterGIS supports collaborative geospatial analysis in climate adaptation research.

Exploring data from BERD Data Portal with Galaxy

Find out how to explore your Data from the NFDI BERD Data Portal directly in Galaxy

Genome Assembly and Annotation Training using Galaxy and TIaaS

Using the Galaxy infrastructure and workflows to teach de-novo genome assembly and annotation

Vizgen Postprocessing Tool (VPT) now available in Galaxy

Reprocess and refine the single-cell results of MERSCOPE experiments

Events

Jun 3Galaxy Community Board Meeting: 🪑GCB

Jun 5Single-cell & sPatial Omics Community Meeting: 🖖🏾SPOC

Jun 10 - Jun 16Mycobacterium tuberculosis complex NGS made easy

These series of webinars and tutorials aim at improving basic and applied knowledge associated with NGS technologies and their applications in the field of Tuberculosis.

Jun 19Small Scale Galaxy Admins Meeting

Jun 23 - Jun 26Galaxy and Bioconductor Community Conference

Get ready for the first-ever Galaxy and Bioconductor Community Conference (GBCC 2025)! Join us in New York for an unforgettable event packed with cutting-edge bioinformatics workshops, inspiring keynotes, and amazing networking opportunities.