Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention policy before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

Training

If you are organising a training session, you can book computing resources using the TIaaS system

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

Citation

Have you used the French Galaxy server for your data analysis?



Team

The French Galaxy team is distributed across different cities in France.



Communities: domain-centric Galaxy subdomains

Microbiology

Whether you're working with microbiome samples or bacterial isolates, long or short reads, shotgun or 16S sequencing, genomics, transcriptomics, proteomics, metabolomics, or integrative multi-omics analysis—this is the place for you!

Single-cell

Access Single Cell Omics analysis tutorials, tools, and workflows that let you analyse data without programming experience or private infrastructure.

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Covid19

Variant analysis, consensus using community approved workflows and datasets

Metabarcoding

With the following tools and pipelines: FROGS, QIIME, Mothur, Obitools, dada2, PICRUSt

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

MNHN

Tools from the French Muséum National d'Histoire Naturelle

News

RSpace is now integrated with Galaxy

Analyze data with Galaxy, keep it under control on RSpace

New Galaxy Tool: AI-powered Data Analysis Agent

Perform AI-augmented data analysis directly in Galaxy using natural language

The Galaxy 25.0 Release is Live!

The latest Galaxy release is here and is packed with enhanced collection capabilities, streamlined workflow management, interactive tools and visualizations improvements, and new integrations to accelerate your research.

An Ode to the Galaxy Community and all I learned

This is my ode to the Galaxy Community to say how grateful I have been for your welcome, your energy, and your support

W4E2025 Workshop Review – Empowering Metabolomics Researchers with W4M

Bring your own data Metabolomics Training Recap.

Events

Jun 23 - Jun 26Galaxy and Bioconductor Community Conference

Get ready for the first-ever Galaxy and Bioconductor Community Conference (GBCC 2025)! Join us in New York for an unforgettable event packed with cutting-edge bioinformatics workshops, inspiring keynotes, and amazing networking opportunities.

Jun 30 - Jul 4From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

This course introduces scientists to the data analysis platform Galaxy