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Swiss Galaxy Workshop, Wednesday, October 3rd, Bern

Swiss Galaxy Workshop, Wednesday, October 3rd, Bern


This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.

We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.

The workshop is part of the SyBIT Tech Day series.


Time Speaker Title Slides
9:15 - 9:30 ARRIVAL
9:30 - 9:40 Peter Kunszt (SyBIT) Welcome and usual news
9:40 - 9:50 Hans-Rudolf Hotz (FMI) Galaxy Introduction pdf
9:50 - 10:30 Dannon Baker (Galaxy Project) Status of the Galaxy Project pdf
10:30 - 11:00 BREAK
11:00 - 11:15 Mark Robinson (IMLS, University of Zurich) edgeR and Galaxy pdf
11:15 - 11:30 Tim Roloff (FMI) Microarray analaysis pdf
11:30 - 11:45 Hans-Rudolf Hotz (FMI) NGS analysis pdf
11:45 - 12:00 Manuel Kohler (D-BSSE, ETH Zurich) openBIS and Galaxy pdf
12:00 - 13:45 LUNCH Break (lunch will be at 12:15)
13:45 - 14:00 Nikolai Vazov (USIT, University of Oslo) Installing Galaxy on a cluster : issues around DB server, queuing system, external authentication, etc. odp
14:00 - 14:30 Jelle Scholtalbers (TRON gGmbh, University of Mainz) NGS sample tracking and processing pdf
14:30 - 14:45 Mario Emmenlauer (Biozentrum, University of Basel) High Content Screening (Bee) pdf
14:45 - 15:15 BREAK
15:15 - 15:30 Grainne Kerr (DKFZ, Heidelberg) Galaxy and a high throughput screening lab pdf
15:30 - 15:45 Björn Grüning (University of Freiburg) Chemical Tool Box html5
15:45 - 16:00 Sveinung Gundersen (The Norwegian Radium Hospital) Genomic HyperBrowser [pdf](https://depot.galaxyproject.org/hub/attachmentsrimary or operator)
16:00 - 16:01 Hans-Rudolf Hotz (FMI) concluding remarks
16:01 - 16:15 DEPARTURE (....and going to the pub)


Bern Hochschulstr. 4

Bern Hochschulstr. 4
Room 331

Accessibility by public transport: it is a 5 minutes walk from the main train station. Take exit "Grosse Schnaze/Universitaet" (the one with the elevator). Walking out of the elevator, you will be standing in front of the Hauptgebaeude. Take the entrance of the left side.

SyBIT SystemsX.ch


This workshop is generously supported by SyBIT / SystemsX.ch


The workshop is full, and registration is closed. Please contact Hans-Rudolf Hotz in order to get informed in case places become available again.


Contact Hans-Rudolf Hotz