Swiss Galaxy Workshop, Wednesday, October 3rd, Bern

    Swiss Galaxy Workshop, Wednesday, October 3rd, Bern

    Audience

    This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.

    We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.

    The workshop is part of the SyBIT Tech Day series.

    Schedule

    Time Speaker Title Slides
    9:15 - 9:30 ARRIVAL
    9:30 - 9:40 Peter Kunszt (SyBIT) Welcome and usual news
    9:40 - 9:50 Hans-Rudolf Hotz (FMI) Galaxy Introduction pdf
    9:50 - 10:30 Dannon Baker (Galaxy Project) Status of the Galaxy Project pdf
    10:30 - 11:00 BREAK
    11:00 - 11:15 Mark Robinson (IMLS, University of Zurich) edgeR and Galaxy pdf
    11:15 - 11:30 Tim Roloff (FMI) Microarray analaysis pdf
    11:30 - 11:45 Hans-Rudolf Hotz (FMI) NGS analysis pdf
    11:45 - 12:00 Manuel Kohler (D-BSSE, ETH Zurich) openBIS and Galaxy pdf
    12:00 - 13:45 LUNCH Break (lunch will be at 12:15)
    13:45 - 14:00 Nikolai Vazov (USIT, University of Oslo) Installing Galaxy on a cluster : issues around DB server, queuing system, external authentication, etc. odp
    14:00 - 14:30 Jelle Scholtalbers (TRON gGmbh, University of Mainz) NGS sample tracking and processing pdf
    14:30 - 14:45 Mario Emmenlauer (Biozentrum, University of Basel) High Content Screening (Bee) pdf
    14:45 - 15:15 BREAK
    15:15 - 15:30 Grainne Kerr (DKFZ, Heidelberg) Galaxy and a high throughput screening lab pdf
    15:30 - 15:45 Björn Grüning (University of Freiburg) Chemical Tool Box html5
    15:45 - 16:00 Sveinung Gundersen (The Norwegian Radium Hospital) Genomic HyperBrowser pdf
    16:00 - 16:01 Hans-Rudolf Hotz (FMI) concluding remarks
    16:01 - 16:15 DEPARTURE (....and going to the pub)

    Location

    Bern Hochschulstr. 4

    Bern Hochschulstr. 4
    Hauptgebaeude
    Room 331

    Accessibility by public transport: it is a 5 minutes walk from the main train station. Take exit "Grosse Schnaze/Universitaet" (the one with the elevator). Walking out of the elevator, you will be standing in front of the Hauptgebaeude. Take the entrance of the left side.


    SyBIT SystemsX.ch

    Support

    This workshop is generously supported by SyBIT / SystemsX.ch

    Registration

    The workshop is full, and registration is closed. Please contact Hans-Rudolf Hotz in order to get informed in case places become available again.

    Questions?

    Contact Hans-Rudolf Hotz