CloudMap is a Galaxy-based pipeline that greatly simplifies the analysis of mutant genome sequences from raw FASTQ reads all the way to mapping plots and short lists of candidate mutations. We demonstrate the utility of CloudMap for WGS analysis of C. elegans and Arabidopsis genomes and describe how other organisms (e.g. Zebrafish, Drosophila) can easily be accommodated. Automated workflows and extensive video user guides are available to detail the individual analysis steps performed.
For details, see
- Gregory Minevich, Danny S. Park, Daniel Blankenberg, Richard J. Poole and Oliver Hobert1, "CloudMap: A Cloud-based Pipeline for Analysis of Mutant Genome Sequences." Genetics. 2012 Oct 11; and
- the CloudMap Galaxy Page
Greg Minevich and Dan Blankenberg