Workflows
Overview
The Vertebrate Genomes Pipelines in Galaxy are intended to allow a user to generate high-quality near error-free assemblies of species from a user's own data or from the GenomeArk database. Depending on the available data, different versions of this workflow are available.
| Link | Workflow | Inputs | Outputs | ||
|---|---|---|---|---|---|
| Dockstore | MerylDB generation: Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. ILL-PE |
1. Hifi long reads [fastq] |
1. Meryl Database of kmer counts 2. GenomeScope summary, models and plots |
||
| Dockstore | MerylDB generation Trio: Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury using parental and offspring datasets ILL-PE |
1. Hifi long reads [fastq] 2. Paternal short-read Illumina sequencing reads [ fastq] 3. Maternal short-read Illumina sequencing reads [ fastq] |
1. Meryl Database of kmer counts 2. GenomeScope summary, models and plots |