GalaxEast

Integrative 'omics data analysis

This is a General Purpose / Genomics server.

Links

Comments

  • From Le Gras et al.
    • provides access to up-to-date tools and algorithms such as those devoted to Next Generation Sequencing (NGS) data analysis of:
      • Epigenome: MACS, Homer
      • Genomic sequence: GATK, Samtools, BEDtools, Picard
      • Transcriptome: Cufflinks, HTSeq, TopHat
      • Statistical analyses: DeepTools, S-mart, DESeq
    • GalaxEast provides access to workflows developed for:
      • Motif search
      • Repetitive element analyses
      • ChIP-seq data analysis
    • GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses.
    • The GalaxEast project has the following main objectives:
      • Provide the academic scientific community with an open and powerful Galaxy instance with a guaranteed availability. The platform offers access to cutting-edge and up-to-date tools for Omics data analysis with help and support.
      • Propose innovative developments and new helpful tools packaged for Galaxy (available in the GalaxEast toolshed)
      • Promote the packaging of new developments for Galaxy (through wrappers and/or toolshed packages).
  • GalaxEast deployment details

User Support

Quotas

  • You must be part of an academic research lab and provide a valid academic email address to get a personal GalaxEast account. Write to galaxy@igbmc.fr to request an account.
  • Academic users are allocated 50GB.

Citation(s)

Sponsor(s)