Data issues

Master Genomes Additions ticket with all tracked issues/enhancements: https://github.com/galaxyproject/galaxy/issues/1470

List of most important active issues below

All issues related to the servers http://usegalaxy.org and https://test.galaxyproject.org/

  1. rn6 and danRer10 missing len data. https://github.com/galaxyproject/galaxy/issues/2884
  2. Related ^^^ Add latestest UCSC genomes to builds.txt plus .len data to http://usegalaxy.org. https://github.com/galaxyproject/galaxy/issues/2530
  3. papHam1 is reporting just "papHam" as the dbkey with (at least) Bowtie2: Needs review/ticket.
  4. LiftOver DM request. https://github.com/galaxyproject/galaxy/issues/1904
  5. Update SICER to include more genome builds (ideally all on the instance). https://github.com/galaxyproject/tools-devteam/issues/390
  6. rheMac3 has 2 copies of the index files listed in the data table, but at different directories.

Resolved

  1. Track promotion of Kraken reference data to http://usegalaxy.org. https://github.com/galaxyproject/galaxy/issues/1679