Downloading Data

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Download datasets

Download entire histories

Transfer entire histories from one Galaxy server to another

Large Datasets

Browser option

Download datasets from Galaxy to your computer by clicking on the "disk icon" within an expanded dataset.

  • Most datasets will only have one file per dataset.
  • Datasets with a bam datatype will have two files per dataset 1) the bam dataset itself plus 2) the associated bai index. Download each individually. See Common datatypes explained: bam.
  • Datasets with a fasta datatype will have one file per dataset. If you need a fasta fai index, one can be created and downloaded. See Common datatypes explained: fasta.

Dataset downloading incompletely?

Command-line option and Dataset Collections

Dataset(s) not downloading at all?