Galaxy-SynBioCAD
| Public server: | Galaxy-SynBioCAD |
|---|---|
| Scope: | Domain specific |
| Summary: | Synthetic biology and metabolic engineering |
comments
Provides a suite of interoperable and standardized tools for designing pathways from the design specification (choice of the compound, strain) to the DNA parts to be assembled.
- SMBL is used for strain and pathway info, and SBOL is used for genetic layouts.
user support
- There is also a QuickStart Creating and Sharing Workflows video tutorial using retrosynthesis as an example.
- Workflows for retrosynthesis, pathway analysis and ranking, and genetic design are available. Video tutorials (and backing datasets) are available for all of these.
- FAQ
- Email support
quotas
You need to create an account. Anyone can create an account.
citations
Lac, M. du, Duigou, T., Herisson, J., Carbonell, P., Swainston, N., Zulkower, V., Shah, F., Faure, L., Mahdy, M., Soudier, P., & Faulon, J.-L. (2020). Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows. BioRxiv, 2020.06.14.145730. DOI: 10.1101/2020.06.14.145730
- Faulon, JL, du Lac, M, Duigou, T., Carbonell, P., Herisson, J. Design Automation Workflows for Synthetic Biology and Metabolic Engineering: The Galaxy SynBioCAD portal (Video), of 12th IWBDA-2020, 25-26, 2020.
- SynBioCAD tagged publications in the Galaxy Publication library
