What are Data Managers?
Data Managers are a special class of Galaxy tool which allows for the download and/or creation of data that is stored within Tool Data Tables and their underlying flat (e.g. .loc) files. These tools handle e.g. the creation of indexes and the addition of entries/lines to the data table / .loc file via the Galaxy admin interface.
Data Managers can be defined locally or installed through the Tool Shed.
A Video Introduction
For a video overview on Data Managers, see this presentation from GCC2013.
The most up-to-date methods, including how to use Data Manager repositories in the ToolShed: GCC2014 TrainingDay
What Kind of Data is Supported
The Data Manager framework supports any kind of built-in ("pre-cached") data that a tool developer would like to make available via a Tool Data Table. This includes reference genomes, indexes on a reference genome, Blast databases, protein or pathway domain databases, and so-on. This built-in data does not need to be associated with any type of reference, build, or dbkey (genomic or otherwise), but, in many cases, Tool Data Table entries and their Data Manager will be tied to a specific genomic build.
Graphical Overview of Interplay between Built-in Data and Galaxy Tools
List of pages in this category
- Data Managers
- Data Manager XML Syntax
- Data Manager JSON Syntax
- Data Managers API
- Writing Data Manager Tests
- Defining Data Managers