Genome download & indexing using Galaxy rsync servers

Python script in CloudBioLinux

By Brad Chapman

February 21st 2013

See (external) blog entry

From CloudBioLinux Repo

Implemented as a script in the CloudBioLinux GitHub repository.

Uses the CloudBioLinux data framework to install:

fab -f data_fabfile.py -H your_machine -c your_fabricrc.txt install_data_rsync:your_biodata.yaml

This is still a work in progress and doesn't support all genomes.

See this and other Galaxy-related posts in The Galactic Blog