The Galactic Blog
Welcome to the Galactic Blog, a list of Galaxy related blog posts from community members. This blog contains longer form posts or pointers to longer form posts that are elsewhere on the web.
The Galactic Blog complements the Galxy News feed.
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See the hub CONTRIBUTING page in general, and the blog section in particular for directions on how to add a blog entry.
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| Date | Author(s) | Topic |
|---|---|---|
| 2018 Feb 01 | Arun Decano | Coding in the Winter Wonderland: Galaxy Admin Training in Oslo, 2018 |
| 2018 Jan 08 | Ming Chen from Staton Lab | Galaxy R Markdown Tools Using R Markdown as a framework to develop Galaxy tools |
| 2017 Dec 12 | Tomas Klingström from the Galactic Blog | Galaksio: a Galaxy user interface focused on running prepared workflows Make your workflows more accessible to non-bioinformaticians |
| 2017 Dec 11 | Tomas Klingström | Bioinformatic training with the B3Africa project Training using the Galaksio interface |
| 2017 Dec 01 | Vimalkumar Velayudhan | Setup your own instance of the Galaxy Bioinformatics platform on DigitalOcean Setup a DigitalOcean droplet with Galaxy, Apache and PostgreSQL |
| 2017 Nov 08 | B. Grüning from the Galactic Blog | Galaxy Docker 17.09 CVMFS and Singularity support |
| 2017 Oct 16 | Anton Nekrutenko from the Galactic Blog | Small genome assembly in Galaxy Why not to do assembly on-line? |
| 2017 Oct 16 | Dave Clements from the Galactic Blog | Galaxy: the first 5,000 pubs The Galaxy Publication Library hits a milestone |
| 2017 Oct 10 | Björn Grüning from the Galactic Blog | SciPy and scikit-learn integration into Galaxy Numpy, SciPy, scikit-learn, pandas - indeed the entire scientific Python stack -... |
| 2017 Oct 06 | E. Rasche from the Galactic Blog | Public Galaxy Server Dashboard a new view of the Universe |
| 2017 Oct 05 | Frederik Coppens, Gildas Le Corguillé, Björn Grüning from the Galactic Blog | ELIXIR establishes a new official Community for Galaxy ELIXIR is an intergovernmental organisation that brings together life science re... |
| 2017 Oct 04 | Dave Clements from the Galactic Blog | Welcome to the Galactic Blog It needs you |
| 2017 Aug 01 | Jeffrey Perkel from Naturejobs Blog | TechBlog: Jupyter Joins the Galaxy Working with data programmatically inside Galaxy |
| 2017 Jul 31 | Hollydawn Murry from F1000 Research blog | Intergalactique – the Galaxy Community Conference 2017 a run down of this year's Galaxy Community Conference |
| 2017 Jul 25 | Simon Gladman | Elixir, CLIMB, Sanger and the Galaxy Community Conference UK, UK, UK, and France |
| 2017 May 29 | Paul Gordon from ACHRI Bioinformatics | The ungoogleable: Authenticating a Galaxy Portal with Active Directory How to configure Apache to authenticate a user against an LDAP server that requires authentication to search |
| 2017 Apr 28 | Scott Edmunds from (GIGA)Blog | Guardians of the Galaxy Workflow Galaxy Series, Volumes 1-12 |
| 2017 Apr 25 | Peter Briggs from Galactic Engineer | Securing Galaxy with HTTPS running with Nginx using Let’s Encrypt Secure communication between a Galaxy instance and its users |
| 2017 Mar 17 | Nathan Bott | Galaxy: A Workflow Management System for Modern Life Sciences Research Focus on the data |
| 2017 Mar 10 | Rafa Hernández | How to upgrade a Galaxy Docker image A step by step guide |
| 2016 Nov 02 | Chase Miller from iobio Blog | IOBIO Now in Galaxy bam.iobio and vcf.iobio can now be launched directly from galaxy using your data already stored there. |
| 2016 Sep 20 | Björn Grüning from (GIGA)Blog | Conda as a new standard for Galaxy tool dependencies For deployment issues, we need a package manager that is operating system and programming language agnostic... |
| 2016 Aug 24 | Greg Von Kuster | Galaxy tools for Constructive Solid Geometry Galaxy CSG flavor |
| 2016 Jul 13 | Igor Makunin | Moving data between Galaxy instances A howto guide on getting data from one instance to another. |
| 2016 Jun 20 | Marius van den Beek | Running Jobs Outside the Galaxy Docker Container Instructions on how to do this ... |
| 2016 Mar 03 | Alex Kanterakis | Setting up Galaxy with TORQUE on AWS A basic guide on how to setup Galaxy with TORQUE in an EC2 instance |
| 2015 Dec 14 | Nicole Nogoy from (GIGA)Blog | We Wish You a GigaChristmas: A 2015 Wrap-Up a summary of our recent technical developments |
| 2015 Dec 08 | Mikael Loaec, Olivier Inizan | Testing connexion between Galaxy and iRODS Testing the connexion of Galaxy to iRODS object store. |
| 2015 Oct 21 | Steve Cassidy from Steve Cassidy's blog | Galaxy Tool Generating Datasets How to generate dataset collections from a Galaxy tool |
| 2015 Oct 09 | Peter van Heusden from low order magic | How Galaxy resolves tool dependencies (or not) Explanation of Galaxy's tool dependency definitions that specify how to source the actual packages that implement the tool’s commands |
| 2015 Jul 30 | Hans-Rudolf Hotz from the Galactic Blog | Moving from MySQL to PostgreSQL It is pretty simple, though you might hit some obstacles depending on how old your MySQL server is and how much you have manually interfered with the database. |
| 2015 Jul 12 | Benedikt Rauscher, Benjamen White | BioJS2Galaxy - A step by step guide A simple step by step guide on how to use Sebastian Wilzbach’s application, biojs2galaxy. |
| 2015 Jun 02 | Peter Briggs from Galactic Engineer | Exposing Galaxy reports via nginx in a production instance Outline how I've done this for our local Galaxy set up, which uses nginx. |
| 2015 Apr 22 | Peter Briggs from Galactic Engineer | Using GALAXY_SLOTS with multithreaded Galaxy tools Using GALAXY_SLOTS with multithreaded Galaxy tools |
| 2015 Mar 18 | Peter Briggs from Galactic Engineer | Installing ANNOVAR in Galaxy A HOWTO for installing ANNOVAR in Galaxy |
| 2015 Mar 17 | Peter Briggs from Galactic Engineer | Custom Google web searches for Galaxy help Astronomy, phones, sports teams, chocolate, cars. Not. |
| 2015 Feb 28 | Peter Briggs from Galactic Engineer | FTP upload to Galaxy using ProFTPd and PBKDF2 How to implement ProFTPd using PBKFD2 protocol for encryption |
| 2015 Feb 28 | Pierre Lindenbaum from YOKOFAKUN | Integrating a Java Program in Galaxy Example showing how to install a Java program as a tool in a Galaxy instance |
| 2014 Nov 27 | Nicole Nogoy from (GIGA)Blog | Getting Techy With It: GigaScience Technology Update 2014 GigaGalaxy and “bring your own” data parties |
| 2014 Sep 01 | Tracey Timms-Wilson from The Bio-Linux at the NERC Environmental 'Omics Synthesis Centre series | Overview of Galaxy on Bio-Linux 8 Want to run Galaxy under Bio-Linux 8? |
| 2014 Jun 10 | William Holtz from the Galactic Blog | Setting up a secure tool shed with remote authentication Requires some tweaks in order to allow Galaxy to communicate with the Tool Shed |
| 2014 Apr 24 | Scott Edmunds from (GIGA)Blog | All systems go at ICSB 2014 and the Great GigaScience and Galaxy (G3) workshop Tackling irreproducible research |
| 2014 Mar 28 | Olivier Inizan, Mikael Loaec from Puppet Forge | Basic Galaxy Puppet Module A puppet module for a very basic galaxy server (use for development) |
| 2014 Feb 06 | Scott Edmunds from (GIGA)Blog | Rewarding Reproducibility: First Papers in our Galaxy Series utilizing our GigaGalaxy platform GigaScience moves toward more interactive articles |
| 2014 Jan 27 | Tim Booth from the Galactic Blog | Problem with logout when using LDAP for authentication with remoteUser enabled Make changes to 4 Galaxy configuration files |
| 2013 Dec 05 | Contributors | Tool Integration Short Tutorial Documents best practices for tool integration |
| 2013 Oct 27 | Sarah Maman, Nabihoudine Ibou | IGV Integration How to set up IGV-Galaxy integration in Apache and Galaxy, including adding custom genomes |
| 2013 Oct 23 | Contributors | Sharing workflows between servers Process for sharing workflows, including wrapping necessary tools |
| 2013 Oct 12 | Thomas Cokelaer | Using BioServices Python Library with Galaxy A HOWTO on linking BioServices and Galaxy |
| 2013 Jul 09 | John Chilton from CloudBioLinux Repo | CloudBioLinux Deployer CloudMan QuickStart How to build CloudMan instances from scratch using the CloudBioLinux deployer |
| 2013 Jul 09 | Scott Edmunds from (GIGA)Blog | #usegalaxy lights up northern skies eye-wateringly expensive alcohol, brown cheese and reproducible research at the Galaxy Community Conference in Oslo |
| 2013 May 06 | Samuel Lampa from Samuel's Tech Blog | Creating a Galaxy tool for R scripts that output images and PDFs XML wrapper and R code |
| 2013 Apr 10 | Contributors | Virtualization at URGI [hub page] Documents creation of virtual machine ISO image |
| 2013 Feb 21 | Brad Chapman from CloudBioLinux Repo | Genome download & indexing using Galaxy rsync servers [hub page] Python script in CloudBioLinux |
| 2013 Jan 25 | Quang Trinh | Launch a customized modENCODE Galaxy on Amazon Web Services A HOWTO guide |
| 2013 Jan 01 | Kostas Karasavvas from RubyGems.org | Create Galaxy Tool from Taverna 2 Workflow The workflow-to-galaxy Ruby Gem |