Galaxy Community Hub

SARS-CoV-2 Data Analysis and Monitoring with Galaxy, 9-12 August

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

  • Accessible: programming experience is not required to easily upload data, run complex tools and workflows, and visualize results.
  • Reproducible: Galaxy captures information so that you don't have to; any user can repeat and understand a complete computational analysis, from tool parameters to the dependency tree.
  • Transparent: Users share and publish their histories, workflows, and visualisations via the web.
  • Community centered: Our inclusive and diverse users (developers, educators, researchers, clinicians, etc.) are empowered to share their findings.

Welcome to the Galaxy Community Hub, where you'll find community curated documentation of all things Galaxy.


  News

JXTX 2021 Genome Informatics Scholarship – Apply by the end of Sunday, August 1.

Highlights from the Galaxy Community Conference 2021 – 399 participants from 55 countries

July 2021 Galactic News – GCC2021 is under way.

Open Life Science program & the Galaxy community: involvement in OLS-3 and invitation to apply to the next cohort – Open Life Science (OLS) is an online mentoring & training program

Community consultation - help wanted! – The Steering Committee wants your ideas.

  Events

Galaxy Developer Roundtable- Aug 5. TBD

SARS-CoV-2 Data Analysis and Monitoring with Galaxy- Aug 9. ...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...

Galaxy Developer Roundtable- Aug 19. TBD

Comparaison de génomes microbiens - Sep 8. Part of Cycle "Bioinformatique par la pratique" 2021

Analyse de données de métabarcoding- Sep 14. Part of Cycle "Bioinformatique par la pratique" 2021

  @galaxyproject


  Recent Videos

Galaxy 101 (updated) - An introduction to basic Galaxy functionality

ASaiM: From a local project to a global effort to support microbiome data analysis - Bérénice Batut at the "Holistic Bioinformatic Approaches used in Microbiome Research" conference

Webinar: Galaxy Resources for System Administrators and Infrastructure Providers - Gianmaruo Cuccuru and Lucille Delisle wrap up the series

Happy 42nd Birthday James Taylor - James was one of the founders and principal investigators of the Galaxy Project. May 18 would have been his 42nd birthday.

Customizeable welcome and introduction page for new Galaxy users - Galaxy Developer Round Table call

  Blog

A Galaxy of tools at your fingertips – Galaxy is now available in all flavors of the Terra platform.

Galaxy Resources for ... Webinars Summary – Watch them now.

Galaxy Helm chart v4.0 – From dev to testing to production on the same stack.

Plant Transcriptomics Workshop: A Summary – New platform, new learners, new paradigms.

Monitoring of raw open data for SARS-CoV-2 genome surveillance – UseGalaxy.eu is now automatically collecting, and analyzing raw sequencing data published by the COVID-19 Genomics UK Consortium (COG-UK).

  Careers

Image Data Specialist – EMBL Heidelberg, Heidelberg, Germany . Apply by Aug 31.

Ingénieur en biostatistiques – INRAE Toxalim, Toulouse, France . Apply by Sep 1.

Academic Specialist - Software Engineering – Melbourne Bioinformatics, University of Melbourne, Melbourne, Australia . Apply by Aug 11.

ingénieur.e en bioinformatique – Ifremer, Plouzané, France . Apply by Aug 22.

PhD scholarship on functional and evolutionary genomics – CIGENE, Norwegian University of Life Science, Ås, Norway . Apply by Aug 15.


  New Platforms

Galaxy India - The Indian community server.

VVV - Determine the composition of a viral population

SHAMAN - A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK Blast - BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

immuneML - Machine learning-based analysis and classification of adaptive immune receptors and repertoires (AIRR).

  Recent Pubs

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine - Gu, Q., Kumar, A., Bray, S., Creason, A., Khanteymoori, A., Jalili, V., Grüning, B., & Goecks, J. (2021). PLOS Computational Biology, 17(6), e1009014.

Fostering accessible online education using Galaxy as an e-learning platform - Serrano-Solano, B., Föll, M. C., Gallardo-Alba, C., Erxleben, A., Rasche, H., Hiltemann, S., Fahrner, M., Dunning, M. J., Schulz, M. H., Scholtz, B., Clements, D., Nekrutenko, A., Batut, B., & Grüning, B. A. (2021). PLOS Computational Biology, 17(5), e1008923.

A constructivist-based proposal for bioinformatics teaching practices during lockdown - Gallardo-Alba, C., Grüning, B., & Serrano-Solano, B. (2021). PLOS Computational Biology, 17(5), e1008922.

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19) - Rajczewski, A. T., Mehta, S., Nguyen, D. D. A., Grüning, B., Johnson, J. E., McGowan, T., Griffin, T. J., & Jagtap, P. D. (2021). Clinical Proteomics, 18(1), 15.

SHAMAN: A user-friendly website for metataxonomic analysis from raw reads to statistical analysis - Volant, S., Lechat, P., Woringer, P., Motreff, L., Campagne, P., Malabat, C., Kennedy, S., & Ghozlane, A. (2020). BMC Bioinformatics, 21(1), 345.