Introduction to Galaxy Workshop

    Registration

    To register, please contact Glasgow Polyomics via this enquiry form.

    Audience

    Are you a life scientist who needs to do complex analysis on large datasets?

    Galaxy is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.

    This hands-on workshop will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. It will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

    No programming or Linux command line experience is required.

    Agenda

    Day 1: Learning to Walk

    Time Topic
    9:00 Introduction
    Welcome and logistics
    9:30 Basic Analysis
    Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
    10:45 Break
    11:15 Basic Analysis (cont'd)
    12:00 Basic Analysis into Reusable Workflows
    Genericise our analysis into something we can use again.
    12:30 Lunch (on your own)
    13:30 ChIP-Seq Analysis
    Our first dive into NGS data
    15:30 Break
    16:00 Genome Assembly Concepts
    Genome assembly basics and big picture
    16:30 Q and A Session
    17:00 Done

    Day 2: Learning to Run

    9:00 Overview
    9:15 RNA-Seq Example Part I
    10:30 Break
    10:45 RNA-Seq Example Part II
    12:00 Lunch (on your own)
    13:00 SNP & Variant Calling Part I
    15:30 Break
    15:45 SNP & Variant Calling Part II
    16:15 Setting up your own Galaxy Cluster on the Amazon Cloud
    Every participant will set up their own functional and populated (but short-lived) Galaxy server on the cloud
    17:00 Done

    Logistics

    The workshop is being held at Computer Cluster 515, West Medical Building on the Gilmorehill Campus, University of Glasgow.

    The course fee is £50. A refund will be issued if a booking is cancelled more than one week prior to the workshop.

    Tea and coffee will be provided, but please note that lunch is not provided.

    Glasgow Polyomics

    University of Glasgow

    Amazon Web Services

    Support

    This workshop is supported by Glasgow Polyomics at the University of Glasgow, an AWS in Education grant award, and the National Institutes of Health (NIH).

    Slides

    Feedback

    • Your feedback matters! We will ask for it at the end of the workshop.

    Questions?

    Contact Amy Cattanach or Dave Clements.