Program

GCC2023 consists of the main meeting, interactive training, and a collaboration fest (CoFest). The main meeting and the training are interleaved on the same days with the CoFest following.

Schedule

Each day of the meeting, there will be three sessions, morning talks, mid-day training, and afternoon talks, with breaks and lunch in between. CoFest is largely a free-form event that will be organized on the spot.

Training events will consist of five parallel tracks, each session being 2.5 hours long. More details for each of the trainings will be provided as we approach the conference.

Below you can see the program schedule at a glance while the list of talks and accompanying abstracts are available in this document.

Keynote speakers

GCC2023 is excited to present three keynote speakers that collectively will showcase how Galaxy is used to address challenges in biodiversity, biosecurity and structural biology.

BioDiversity

Dr. Carolyn Hogg, with a talk titled To infinity and beyond – combining genomics and cloud technology to save our species Senior Research Manager Australasian Wildlife Genomics Group School of Life and Environmental Sciences University of Sydney

I have been working on the conservation of threatened species for over twenty-five years both in Australia and overseas. I am currently the Senior Research Manager for the Australasian Wildlife Genomics Group in the Faculty of Science. I have been working with the Save the Tasmanian Devil Program for the past ten years; in addition to other species such as orange-bellied parrots, koalas, bilbies, and woylies. Working closely with both my academic and conservation management partners my vision is to create a conservation legacy for Australia by changing the way we integrate science, management and policy; to proactively promote species’ resilience in the face of a changing world. We are achieving this by developing better tools and technologies to integrate molecular genetics into real-time conservation management decisions.

Structural Biology

Dr. Kate Michie, with a talk titled Alphafold2 and the Age of Deep Learning : Recent advances in structural biology Senior Lecturer Structural Biology Facility Mark Wainwright Analytical Centre University of New South Wales

Dr. Michie is a Senior Lecturer at the University of New South Wales (in BABS and the Structural Biology Facility MWAC)with over two decades of expertise in Protein Structural Biology. She has completed her doctoral degree from the University of Sydney and received prestigious fellowships from L'Oréal-UNESCO and Marie Curie to continue her research at the Laboratory of Molecular Biology in Cambridge UK (2006-2010). Her research primarily focuses on molecular biology of filament forming proteins, with a particular interest in structural biology. Dr Michie has published papers in top scientific journals, including Nature, Molecular Cell and PNAS, and has made significant contributions to the field of bacterial cell division, in the field of filament forming proteins and more recently in light harvesting proteins from Algae.

Dr. Michie has also been involved in various community roles within the field of structural biology. She established the Structural Biology Facility at UNSW in 2019, which provides state-of-the-art resources for researchers in the field. She is the coordinator for the Greater Sydney Collaborative Access Program for MX beamtime at the Australian Synchrotron, the President of the Sydney Protein Group, and established the Computational Structural Biology Workgroup at UNSW, bringing together researchers across campus who use computational structural biology resources.

Aside from her research, Dr. Michie is also uses Alphafold2 extensively, which she has helped set up in the cloud at UNSW within 2 weeks of the code being publicly released. She has worked closely with a wide range of researchers to teach them how to use this powerful tool to advance their research, and has already had a number of successful collaborative grants awarded for projects impacted by Alphafold2. Dr Michie's drive and leadership in this area have been instrumental in providing UNSW researchers with access to the computing resources they need to stay competitive on a world stage.

BioDiversity

Associate Professor Roberto Barrero Gumiel, with a talk titled Improving plant industry access to new genetics through faster and more accurate diagnostics of plant viruses and viroids Senior Bioinformatics Solutions Architect Academic Division Research Portfolio eResearch

A/Professor Roberto Barrero has joined the Queensland University of Technology bringing his Bioinformatics expertise to contribute tackling real world problems in Agriculture, Plant Biosecurity and Human Health. He has led the bioinformatics analysis of a range of projects with applications in both the agricultural and biomedical domains. He has formal training in molecular biology and developed bioinformatics skills over 15 years working as part of large international collaboration consortia including Human Invitational Consortium, Rice Annotation Project, Cattle tick Genome Sequencing Consortium and the International Barley Genome Consortium. He has conducted analysis and comparative genomics in crop plants, pathogenic bacteria, viruses, animal genomics and human diseases.

He has devised innovative strategies in experimental design in a range of large genomics initiatives in model and non-model species. He led the implementation of customised computational workflows to data analysis to enable advanced research applications, run bioinformatics workshops, and mentored and supervised other bioinformaticians and PhD students.

More recently, he led a multidisciplinary team at the Plant Biosecurity Cooperative Research Centre to develop a plant diagnostic toolkit that accurately detects a range of viruses and viroids in a single test. Dr Barrero and the team were awarded the ‘Biosecurity Impact Award 2018’ recognising their measurable change to plant biosecurity by delivering research outcomes to end-users and change in policy for the quarantine screening of viruses in ornamental grasses. He has been invited to be the Project Coordinator of an international collaboration involving National Plant Protection Organisations from nine countries to harmonize standards and best practices for regulatory application of high throughput technologies for phytosanitary diagnostics.