Program
The 2012 Galaxy Community Conference included two full days of accepted talks, lightning talks, breakout sessions, and networking time. The conference was preceded by a full day of training sessions that cover 10 topics over four 90 minute sessions.
Summaries
- Peter Li, Jeremy Goecks and Tin Lap Lee's Meeting report in Genome Biology.
- Peter Li's GigaBlog post
- Brad Chapman's day 1 and day 2 summaries.
Day 0: July 25, Wednesday, Training Day
The 2012 Galaxy Community Conference was preceded by a Training Day, featuring 3 parallel tracks, each featuring four, 90 minutes workshops and covering 10 different topics.
See the Training Day page for complete details on each session.
Time | Main Room C | Meeting Room F | Meeting Room E |
---|---|---|---|
8:00 | Continental Breakfast, Registration Open | ||
9:00 | WS1: Integrating Tools & Data Sources | WS2: Introduction to Galaxy | WS3: Galaxy CloudMan |
10:30 | Break | ||
11:00 | WS4: Galaxy Code Architecture | WS5: Installing Your Own Galaxy | WS6: Galaxy API |
12:30 | Lunch Break | ||
2:00 | WS7: Galaxy Tool Shed | WS8: Variant and SNP Analysis with Galaxy | WS1: Integrating Tools & Data Sources |
3:30 | Break | ||
4:00 | WS9: RNA-Seq Analysis with Galaxy Curtis Hendrickson, David Crossman & Jeremy Goecks |
WS10: Ion Torrent – Open Source Sequencing | WS6: Galaxy API |
5:30 | Finish |
Day 1: July 26, Thursday
The main meeting started on Thursday, July 26, and featured submitted talks from the Galaxy Community and Galaxy Team.
Day 2: July 27, Friday
Time | Topic |
---|---|
8:00-9:00 | Continental Breakfast |
9:00-9:10 | Welcome Christopher Fields University of Illinois at Urbana-Champaign |
9:10-10:30 | Session 5 Moderator: Birgit Crain, Complete Genomics |
9:10 | High level distributed processing pipelines with Galaxy Brad Chapman, Harvard School of Public Health |
9:30 | Proteomics tools for Galaxy Ira Cooke, La Trobe University |
9:50 | Using Galaxy for Molecular Assay Design James Ireland, 5AM Solutions |
10:10 | The National Center for Genome Analysis Support and Galaxy Richard LeDuc, Indiana University |
10:30-10:55 | Break |
10:55-12:15 | Session 6 Moderator: Neil Bahroos, University of Illinois Chicago |
10:55 | Integration of SeqWare within Galaxy Zhibin Lu, Ontario Institute for Cancer Research |
11:15 | Window2Galaxy – Enabling Linux-Windows Hybrid Workflows Liram Vardi, Agilent Labs |
11:35 | NBIC Galaxy to Strengthen the Bioinformatics Community in the Netherlands David van Enckevort, Netherlands Bioinformatics Centre |
11:55 | GenomeSpace Ted Liefeld, Broad Institute |
12:15-1:10 | Lunch |
1:10-2:50 | Session 7 Moderator: Ross Lazarus, BakerIDI |
1:10 | Tool Shed and Changes to Galaxy Distributions Greg von Kuster, Penn State University |
1:30 | Lightning Talks |
Customizing Galaxy for a Hospital Environment Larry Helseth, NorthShore University HealthSystem |
|
ObjectStore Nate Coraor, Penn State University |
|
Galaxy and Condor: Challenges with harnessing widely-distributed resources Jaime Frey, University of Wisconsin-Madison |
|
Interactive metagenomic visualization in Galaxy Brian Ondov, NBACC |
|
Reusable / Scalable Workflows Clare Sloggett, VLSCI |
|
The Galaxy VM Launcher John Chilton, University of Minnesota |
|
Differential Expression with Diagnostic Plots using sam2counts and DESeq Nikhil Joshi, UC Davis |
|
Galaxy-P Pratik Jagtap, University of Minnesota |
|
The Genomic Hyperbrowser: Prove Your Point Geir Kjetil Sandve, University of Oslo |
|
ChemicalToolBox Björn Grüning, Albert-Ludwigs-University Freiburg |
|
2:45 | Video (starts @ 12:35) Closing Remarks Anton Nekrutenko, Penn State University, James Taylor, Emory University |
2:55-3:15 | Break |
3:15-5:00 | Session 8: Breakouts Moderator: Dave Clements, Emory University Breakouts |
5:00 | 2012 Galaxy Community Conference ends |
Questions? Ask the organizers.