Program
The 2012 Galaxy Community Conference included two full days of accepted talks, lightning talks, breakout sessions, and networking time. The conference was preceded by a full day of training sessions that cover 10 topics over four 90 minute sessions.
Summaries
- Peter Li, Jeremy Goecks and Tin Lap Lee's Meeting report in Genome Biology.
- Peter Li's GigaBlog post
- Brad Chapman's day 1 and day 2 summaries.
Day 0: July 25, Wednesday, Training Day
The 2012 Galaxy Community Conference was preceded by a Training Day, featuring 3 parallel tracks, each featuring four, 90 minutes workshops and covering 10 different topics.
See the Training Day page for complete details on each session.
| Time | Main Room C | Meeting Room F | Meeting Room E |
|---|---|---|---|
| 8:00 | Continental Breakfast, Registration Open | ||
| 9:00 | WS1: Integrating Tools & Data Sources | WS2: Introduction to Galaxy | WS3: Galaxy CloudMan |
| 10:30 | Break | ||
| 11:00 | WS4: Galaxy Code Architecture | WS5: Installing Your Own Galaxy | WS6: Galaxy API |
| 12:30 | Lunch Break | ||
| 2:00 | WS7: Galaxy Tool Shed | WS8: Variant and SNP Analysis with Galaxy | WS1: Integrating Tools & Data Sources |
| 3:30 | Break | ||
| 4:00 | WS9: RNA-Seq Analysis with Galaxy Curtis Hendrickson, David Crossman & Jeremy Goecks |
WS10: Ion Torrent – Open Source Sequencing | WS6: Galaxy API |
| 5:30 | Finish | ||
Day 1: July 26, Thursday
The main meeting started on Thursday, July 26, and featured submitted talks from the Galaxy Community and Galaxy Team.
Day 2: July 27, Friday
| Time | Topic |
|---|---|
| 8:00-9:00 | Continental Breakfast |
| 9:00-9:10 | Welcome Christopher Fields University of Illinois at Urbana-Champaign |
| 9:10-10:30 | Session 5 Moderator: Birgit Crain, Complete Genomics |
| 9:10 | High level distributed processing pipelines with Galaxy Brad Chapman, Harvard School of Public Health |
| 9:30 | Proteomics tools for Galaxy Ira Cooke, La Trobe University |
| 9:50 | Using Galaxy for Molecular Assay Design James Ireland, 5AM Solutions |
| 10:10 | The National Center for Genome Analysis Support and Galaxy Richard LeDuc, Indiana University |
| 10:30-10:55 | Break |
| 10:55-12:15 | Session 6 Moderator: Neil Bahroos, University of Illinois Chicago |
| 10:55 | Integration of SeqWare within Galaxy Zhibin Lu, Ontario Institute for Cancer Research |
| 11:15 | Window2Galaxy – Enabling Linux-Windows Hybrid Workflows Liram Vardi, Agilent Labs |
| 11:35 | NBIC Galaxy to Strengthen the Bioinformatics Community in the Netherlands David van Enckevort, Netherlands Bioinformatics Centre |
| 11:55 | GenomeSpace Ted Liefeld, Broad Institute |
| 12:15-1:10 | Lunch |
| 1:10-2:50 | Session 7 Moderator: Ross Lazarus, BakerIDI |
| 1:10 | Tool Shed and Changes to Galaxy Distributions Greg von Kuster, Penn State University |
| 1:30 | Lightning Talks |
| Customizing Galaxy for a Hospital Environment Larry Helseth, NorthShore University HealthSystem |
|
| ObjectStore Nate Coraor, Penn State University |
|
| Galaxy and Condor: Challenges with harnessing widely-distributed resources Jaime Frey, University of Wisconsin-Madison |
|
| Interactive metagenomic visualization in Galaxy Brian Ondov, NBACC |
|
| Reusable / Scalable Workflows Clare Sloggett, VLSCI |
|
| The Galaxy VM Launcher John Chilton, University of Minnesota |
|
| Differential Expression with Diagnostic Plots using sam2counts and DESeq Nikhil Joshi, UC Davis |
|
| Galaxy-P Pratik Jagtap, University of Minnesota |
|
| The Genomic Hyperbrowser: Prove Your Point Geir Kjetil Sandve, University of Oslo |
|
| ChemicalToolBox Björn Grüning, Albert-Ludwigs-University Freiburg |
|
| 2:45 | Video (starts @ 12:35) Closing Remarks Anton Nekrutenko, Penn State University, James Taylor, Emory University |
| 2:55-3:15 | Break |
| 3:15-5:00 | Session 8: Breakouts Moderator: Dave Clements, Emory University Breakouts |
| 5:00 | 2012 Galaxy Community Conference ends |
Questions? Ask the organizers.