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2nd Swiss Galaxy Workshop, Wednesday, October 1st, Bern

2014 Swiss German Galaxy Tour
#SG2014T [#SG2014T](https://twitter.com/hashtag/SG2014T)

After the big success of the first Swiss Galaxy Workshop two years ago, we are going to organize a similar event again in fall 2014.


This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.

We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.

The workshop is part of the SyBIT Tech Day series.

Extra Training Day and Developers Day

Prior to the workshop, we run a Galaxy training/demo Day on Tuesday September, 30th in Bern

Following the workshop, we organise a Developers Day on Thursday, October 2nd in Freiburg (Germany).


Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.

Preliminary Schedule

9:15 - 9:30ARRIVAL
9:30 - 9:45Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)welcomepdf
9:45 - 10:30Dannon Baker (Galaxy Project)Status of the Galaxy Projectpdf
10:30 - 10:50coffee Break
10:50 - 11:40Björn Grüning (University of Freiburg)Galaxy: putting pieces togetherwhiteboard
11:40 - 12:00Nikolay Vazov (USIT, University of Oslo)Authentication in Galaxy : let's use what is out there - National Identity Providerspdf
12:00 - 13:30Lunch Break (lunch will be at 12:15)
13:30 - 13:40Jeevan Karloss (CIGENE, Norwegian University of Life Sciences)Elixir Norway and Galaxypdf
13:40 - 14:00Marco Antonio Mendoza (IGBMC Strasbourg)NGS-QC Generator: A quality control system for ChIP-seq and enrichment-related NGS datasetspdf
14:00 - 14:30Sarah Diehl (MPI-IE Freiburg)deepTools: a flexible platform for exploring deep-sequencing datapdf
14:30 - 15:00coffee Break
15:00 - 15:30Hans-Rudolf Hotz (FMI)Using Galaxy for NGS analysis in a collaborative environmentpdf
15:30 - 15:45Tim-Christoph Roloff (FMI)Genomics analysis at FMIpdf
15:45 - 16:00Torsten Houwaart (University of Freiburg)RNA structure visualized in Galaxypdf
16:00 - 16:01Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)concluding remarks
16:01 - 16:15DEPARTURE (....and going to the pub)


The workshop will be in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station.



This workshop is generously supported by SyBIT / SystemsX.ch


Contact Hans-Rudolf Hotz or Björn Grüning