University of Freiburg

Machine learning SIG at the Galaxy Community Conference 2026

Machine learning at Galaxy Community Conference 2026, Clermont-Ferrand, France

Building Bridges Between Deep Mutational Scanning and Galaxy: My ELIXIR Staff Exchange in Australia

How an ELIXIR Staff Exchange connected the mutational scanning community, Galaxy Australia, and Galaxy Europe through FAIR infrastructure, training, and collaboration.

Accurate Biomedical Classification with TabPFN on Galaxy

Leverage next-generation TabPFN models on the European Galaxy server to classify complex biomedical datasets with high accuracy.

How using collections saved my data

Why you should ask help from the Galaxy experts

Integration of the Hugging Face Hub with Galaxy

Galaxy users can now browse the Hugging Face Hub as a repository source, import models straight into their histories, and feed them into tools. A step-by-step example shows how to pull models from the Hugging Face Hub into Galaxy and then using the existing DocLayout-YOLO tool for document layout segmentation.

Galaxy Tool Wrapping: Introducing the New Tool Developers SIG

Join the newly formed Tool Developers Special Interest Group (SIG) to collaborate on high-quality tool maintenance and standardize best practices across the Galaxy ecosystem. This initiative offers a dedicated space for mentorship, peer review, and community-driven development for developers of all experience levels.

One framework, one workflow, many communities: Freiburg Galaxy team at EOSC Symposium 2025

Galaxy showed how 'one framework, one workflow, many communities' can run cross-disciplinary imaging analyses on the emerging EOSC Federation. Here is what we presented, with slides and video.

European Galaxy Days 2025 recordings now online

European Galaxy Days 2025 might be over, but the talks aren’t. Explore our new playlist featuring highlights from EGD2025

From Functional Nucleic Acids to Galaxy Training: Reflections on My Research Stay in Freiburg

Collaboration and innovation with the Galaxy Europe team

Tabula Sapiens and Tabula Muris Senis Atlases Now Available in Galaxy

Comprehensive Single-Cell Reference Atlases Ready for Import

European Galaxy Days 2025: Many communities, one buzzing week in Freiburg

1–3 Oct 2025, Freiburg: European Galaxy Days, ELIXIR Galaxy, and EuroScienceGateway members convened to align roadmaps and turn plans into solutions, tools, and workflows through talks, demos, and a CoFest.

Microbial Genes Recovery in Galaxy

A new Galaxy workflow enables researchers to recover and analyze microbial genes from metagenomic data.

Group Assignment for Co-Assembly in Galaxy

A new Galaxy workflow supports group-based co-assembly, helping researchers recover more high-quality MAGs by organizing samples with metadata.

Freiburg Galaxy Team at CE-IUSSI Meeting 2025 in Szeged

At CE-IUSSI 2025 in Szeged, the Freiburg Galaxy Team showcased how the FAIRyMAGs workflow enables FAIR, accessible insect microbiome research using Galaxy.

Exploring Genomics with Galaxy: A Six-Week Internship Journey

My internship experience with assembling genomes and annotating them during a 6 week internship

Freiburg Galaxy Team’s Internal Tool Development Workshop

Know more about the recent Tool Development workshop organized at Freiburg Galaxy Team

🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.

Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.

RSpace is now integrated with Galaxy

Analyze data with Galaxy, keep it under control on RSpace

Freiburg Galaxy team at the EGI 2025

From June 03rd to 6th, members from the Freiburg Galaxy team travelled to Santander, Spain to participate and present the EuroScienceGateway (ESG) project at the EGI2025 meeting

Galaxy Team at the 9th Women’s Careers and Networks Symposium

Galaxy Europe took part in the WoCaNet 2025 symposium to support women in science and introduce researchers to accessible, reproducible data analysis.

DOMPS SYMPOSIUM 2026

The use of AI in biological research

NFDI4BIOIMAGE All-Hands Meeting 2025

Galaxy Resources for Educators & Trainers

Part of the Galaxy Resources Webinar Series

Speed up your data analysis with Galaxy: Features no one knows about

Galaxy bridge to Jupyter notebooks and RStudio

Jupyter Notebooks and RStudio in combination with Galaxy workflows

Processing thousands of datasets simultaneously

Processing thousands of datasets simultaneously

Galaxy collections and advanced collections features

Advanced Galaxy workflow features

From parameter sweeping to automatic reports

DRS, long-read-sequencing, proteomics and more - An update to recent COVID-19 workflow developments

Viral Beacon and Galaxy variant workflows

Insights from selection analysis of complete genomes and read-level data

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA

Importance of (open) infrastructures in responding to a pandemic

Galaxy-ELIXIR Webinar/Workshop: Machine Learning using Galaxy

Register by 16 June

Galaxy-ELIXIR Webinar 5: Behind the scenes - Global Open Infrastructures at work

Galaxy-ELIXIR Webinar 3: Cheminformatics - Screening of the main protease

Introduction to Machine Learning using Galaxy

Introduction to Machine Learning using Galaxy (Postponed)

Galaxy single cell RNA-seq data analysis workshop

Galaxy single cell RNA-seq data analysis workshop (Postponed)

Galaxy HTS data analysis workshop in Freiburg

Galaxy beginner workshop on High-Throughput data analysis

Galaxy HTS data analysis workshop

Galaxy beginner workshop on High-Throughput data analysis