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Using Galaxy webhooks to nudge users toward better tools

A small tool-form extension can mark legacy tools as deprecated, keep them available for reproducibility, and guide users toward faster and more efficient alternatives.

UCSC staff visit: enhancing the Genome Browser - Galaxy integration

UCSC staff and Freiburg Galaxy team members had a first meeting on deepening collaboration and integration between the Genome Browser and Galaxy.

Introducing the Zip Explorer: Import individual files from ZIP archives

Preview the contents of local or remote ZIP archives, explore rich RO-Crate metadata, and import only the files you need directly from the Galaxy interface.

Secure Your Tools with Galaxy’s New Credentials System

Galaxy 25.1 introduces a powerful new credentials system that lets tools securely access external APIs and services with encrypted secret storage and a streamlined user experience.

Integration of the Hugging Face Hub with Galaxy

Galaxy users can now browse the Hugging Face Hub as a repository source, import models straight into their histories, and feed them into tools. A step-by-step example shows how to pull models from the Hugging Face Hub into Galaxy and then using the existing DocLayout-YOLO tool for document layout segmentation.

Using Claude AI for Literature Searches

LLMs for literature search produce 'interesting' results: It is almost useful

Galaxy Tool Wrapping: Introducing the New Tool Developers SIG

Join the newly formed Tool Developers Special Interest Group (SIG) to collaborate on high-quality tool maintenance and standardize best practices across the Galaxy ecosystem. This initiative offers a dedicated space for mentorship, peer review, and community-driven development for developers of all experience levels.

LLM Hub: Large Language Models Made Easy in Galaxy

Access powerful Large Language Models in Galaxy easily

Galaxy joins hands with ERGA at the EMBO course for genome sequencing, assembly, curation, and downstream analyses

Know more about the recent EMBO Practical Course on Genome Sequencing, Assembly, Curation, and Downstream Analyses using Galaxy platform.

Exploring Genomics with Galaxy: A Six-Week Internship Journey

My internship experience with assembling genomes and annotating them during a 6 week internship

Freiburg Galaxy Team’s Internal Tool Development Workshop

Know more about the recent Tool Development workshop organized at Freiburg Galaxy Team

New Interactive Tools Panel in Galaxy 25.0

New panel allocated for interactive tools on Galaxy

🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.

Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.

nb2workflow: Turning Annotated Jupyter Notebooks into Galaxy Tools

Convert your scientific notebooks into reusable Galaxy tools with just a tag.

From text mining to astronomical sources distance estimation on Galaxy

Estimating redshifts of optical counter parts of sources detected in astronomy texts with a Galaxy Workflow

Topic extraction from Astrophysical Reports and follow-up analysis tool suggestions in Galaxy

Matching short scientific texts to relevant analysis pipelines using AI

Voronoi segmentation for Astronomy

Dividing the sky images in regions that include individual astronomical objects.

JupyterGIS: Collaborative Geospatial Analysis in the Cloud

Explore how JupyterGIS supports collaborative geospatial analysis in climate adaptation research.

Vizgen Postprocessing Tool (VPT) now available in Galaxy

Reprocess and refine the single-cell results of MERSCOPE experiments

Effortless data labeling with AI support from YOLO and Segment Anything on Galaxy Europe!

Use AnyLabeling in the European Galaxy Server as an interactive tool

Events (4)