Freiburg Galaxy Event Archive

Old events relevant to the Freiburg Galaxy community.

DateTopic/EventVenue/LocationContact
13 April 2023Galaxy Community Call: Using Galaxy to assemble dozens of high-quality vertebrate reference genomes

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Linelle Abueg
30 March 2023Galaxy Metabolomics Community Call

A forum to share updates and discuss community-wide topics.

Galaxy Metabolomics Community Call, Online foellmelanie@gmail.com; helge.hecht@recetox.muni.cz
21 March 2023Small Scale Galaxy Admins Meeting

Online, Global Lucille Delisle
16 March 2023Galaxy Community Call: Collections and assembly pipelines

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Bérénice Batut
2 March 2023Galaxy Community Call: 2023 Galaxy Roadmap

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Galaxy PIs
20 February 2023Workshop on High-Throughput Data Analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

University of Freiburg, GermanyTraining offered by GTN Member Anika Erxleben
9 February 2023Galaxy Community Call: 23.0 Release Testing Outcomes

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Release Testing Team
9 February 2023

microGalaxy is a communities of practice focusing on microbial analysis with Galaxy

Online, Freiburg, Germany Bérénice Batut
6 February 2023

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

Online, EMBL-EBI, Hinxton, United Kingdom Jane Reynolds
2 February 2023A practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy

The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.

FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz, SwitzerlandTraining offered by GTN Member Bérénice Batut
19 January 2023Galaxy Community Call: The Genomic Data Science Community Network

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Natalie Kucher
17 January 2023Small Scale Galaxy Admins Meeting

Online, Global Hans-Rudolf Hotz
17 January 2023

Assemble and analyze a reference-quality genome in Galaxy

Plant and Animal Genomes 30, San Diego, California, United States Michael C. Schatz, Delphine Larivière, Alex Ostrovsky
8 December 2022Galaxy Community Call: UseGalaxy Historic Usage Dashboard

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Enis Afgan
17 November 2022Galaxy Community Call: The new GTN course builder

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Helena Rasche & Saskia Hiltemann
7 November 2022Galaxy @ BioHackathon-Europe 2022

BioHackathon activities are driven by practical sessions where people gather, discuss, and implement ideas and projects during intensive and productive coding sessions

Paris + Online, France Project organizers
31 October 2022Analysis of biological data with Galaxy

Learn how to use Galaxy in YOUR research

Penn State University Park Campus, Wartik Building, Room 501 Greg Von Kuster and Anton Nekrutenko
27 October 2022Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Dannon Baker
14 October 2022

Image analysis using Galaxy

Beatriz Serrano-Solano, Björn Grüning
13 October 2022Galaxy Community Call: Muon Science community

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Eli Chadwick
6 October 2022EuroScienceGateway Kick-off Meeting

Within the European Galaxy Days, the EuroScienceGateway consortium of 18 partners will get together in Freiburg, Germany, for a 2-day Kick-off Meeting.

Institute for Informatics, Albert-Ludwigs-University Freiburg Freiburg Galaxy Team
6 October 2022EuroScienceGateway Kick-off Meeting

Institute for Informatics, Albert-Ludwigs-University Freiburg Freiburg Galaxy Team
3 October 2022

online Melanie Foell
3 October 2022

Online video tutorials about the use of cloud computing resources for MS-based proteomics.

Online Melanie Foell
3 October 2022European Galaxy Days (EGD)

European Galaxy Community meeting in Autumn

Freiburg, Germany Hans-Rudolf Hotz, Björn Grüning, Beatriz Serrano-Solano, Oana Marchis, Anika Erxleben
29 September 2022Galaxy Community Call: Workflows, Planemo, BioBlend and tags to automate SARS-CoV-2 genome surveillance

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Wolfgang Maier
15 September 2022Galaxy Community Call: Tool Search “Past, Present, and Future”

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Michelle Savage, Ahmed Awan, Tyler Collins
1 September 2022CANCELLED: Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Dannon Baker
18 August 2022Galaxy Community Call: Outcomes of the Outreachy projects

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Outreachy mentors & interns
4 August 2022Galaxy Community Call: Machine Learning Toolkit in Galaxy

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Kaivan Kamali
25 July 2022

This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.

Online, Mexico, South Africa, Sydney, UK, India Carolina Castañeda Garcia, Claudine Nkera-Gutabara, Tanya Golubchik, Tracey Calvert-Joshua, Varun Shamanna
16 July 2022

The annual gathering of the Galaxy Community

University of Minnesota, Minneapolis, Minnesota, United StatesTraining offered by GTN Member Organizers
7 July 2022Galaxy Community Call: JupyterLab interactive tool

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Anup Kumar
5 July 2022

KU Leuven, Belgium Kaivan Kamali, Nate Coraor, Marius van den Beek, John Chilton, Anton Nekrutenko
5 July 2022

iRODS 2022 User Group Meeting

KU Leuven, Belgium Kaivan Kamali, Nate Coraor, Marius van den Beek, John Chilton, Anton Nekrutenko
4 July 2022Galaxy RNA-Seq data analysis workshop

We are offering a Galaxy 2-days crash course on RNA-Seq data analysis.

online Freiburg Galaxy Team
4 July 2022Galaxy Training on HTS data analysis for the members of NeuroMac

We are offering a Galaxy training on high-throughput data analysis.

online Dilmurat Yusuf
23 June 2022Galaxy Community Call: Release 22.05

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global John Davis, Marius van den Beek
13 June 2022

Applications close 8 March

EMBL-EBI, Online, Hinxton, United Kingdom Organizers
9 June 2022Galaxy Community Call: Automatic updates of Galaxy tools and workflows

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Simon Bray
9 June 2022

Talk at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Beatriz Serrano-Solano
9 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Johan Gustafsson, Steven Manos, Nigel Ward, Andrew Lonie, Brian Davis, Sarah Beecroft, Carole Goble, Finn Bacall, Nicola Soranzo, Bjӧrn Grüning, Herve Menager, Hans Ienasescu
9 June 2022

Talk at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Björn Grüning
9 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Johan Gustafsson, Steven Manos, Nigel Ward, Andrew Lonie, Brian Davis, Sarah Beecroft, Carole Goble, Finn Bacall, Nicola Soranzo, Bjӧrn Grüning, Herve Menager, Hans Ienasescu
8 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Marianna Ventouratou
8 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Marianna Ventouratou
8 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Katharina Heil
8 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Katharina Heil
7 June 2022

Members of the ELIXIR Galaxy Community, Tools Platform and the Biodiversity Focus Group will introduce the Vertebrate Genomes Project (VGP) and European Reference Genome Atlas (ERGA) initiatives.

ELIXIR All Hands 2022, Amsterdam, Europe Nicola Soranzo, Bérénice Batut, Anthony Bretaudeau, Johan Gustafsson, Jennifer Harrow, Saskia Hiltemann, Jerry Lanfear, Yvan Le Bras, Krzysztof Poterlowicz, Helena Rasche, Beatriz Serrano-Solano, Andrew Lonie, Frederik Coppens, Björn Grüning
7 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Anup Kumar, Kaivan Kamali, Leyla Jael Castro, Fotis E. Psomopoulos and Björn Grüning
7 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Alex Kanitx, Gavin Farrell, Jennifer Harrow, Jonathan Tedds, Finn Bacall, Tewodros Deneke, Álvaro González, Björn Grüning, Lukáš Hejtmánek, Sven Twardziok, Thanasis Vergoulis
7 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Anup Kumar, Kaivan Kamali, Leyla Jael Castro, Fotis E. Psomopoulos and Björn Grüning
7 June 2022

Workshop at the ELIXIR All Hands 2022, Amsterdam, Netherlands Fotis Psomopoulos, Jessica Lindvall, Katharina Heil, Ana P. Melo, Alexia Cardona, Eija Korpelainen, Patricia Palagi, Loredana Le Pera, Eva Alloza, Bérénice Batut, Egon Willighagen
7 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Alex Kanitx, Gavin Farrell, Jennifer Harrow, Jonathan Tedds, Finn Bacall, Tewodros Deneke, Álvaro González, Björn Grüning, Lukáš Hejtmánek, Sven Twardziok, Thanasis Vergoulis
7 June 2022

Workshop at the ELIXIR All Hands 2022

ELIXIR All Hands 2022, Amsterdam, Europe Fotis Psomopoulos, Jessica Lindvall, Katharina Heil, Ana P. Melo, Alexia Cardona, Eija Korpelainen, Patricia Palagi, Loredana Le Pera, Eva Alloza, Bérénice Batut, Egon Willighagen
2 June 2022Galaxy Metabolomics Community Call: Galaxy Interactive Tools - how to create and use them

Dan Blankenberg will present 'How to create and use Galaxy Interactive Tools'

online Melanie Föll
26 May 2022Galaxy Community Call: Galaxy on AnVIL

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Mike Schatz
24 May 2022

European Bioinformatics Institute, Hinxton, United Kingdom Ajay Mishra, Claire O'Donovan, Thomas Payne, Pamela Pruski
24 May 2022

Applications close 18 February

EMBL-EBI, Online, Hinxton, United Kingdom Ajay Mishra, Claire O'Donovan, Thomas Payne, Pamela Pruski
19 May 2022GTN CoFest & Galaxy Papercuts CoFest Day

A community contribution day

Online, Global Community
18 May 2022

The Galaxy Proteomics communities in the US, Australia and Europe regularly come together online to talk about topics of shared interest. All are welcome!

Australian BioCommons, Online, Australia johan@biocommons.org.au
18 May 2022

online de.NBI
17 May 2022

Montpellier, France Stéphanie Bedhomme & Anton Nekrutenko
17 May 2022Small Scale Galaxy Admins Meeting

Online, Global Hans-Rudolf Hotz
12 May 2022Galaxy Community Call: GCC Demo Coordination

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global TBA
28 April 2022Galaxy Community Call: The new History

A forum to share updates and discuss community-wide topics

Galaxy Community Call, Online, Global Aysam Guerler, Marius van der Beek, Beatriz Serrano-Solano
27 April 2022

This course will give a general introduction on the galaxy web-page structure, how to import data, run tools, and share analyses. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.

Lausanne (or online), SwitzerlandTraining offered by GTN Member Lucille Delisle, Hans-Rudolf Hotz
29 March 2022

Microbiome analysis going from samples, to sequencing, to numerical ecology analysis

Earlham Institute & Quadram Institute, Virtual, United KingdomTraining offered by GTN Member Falk Hildebrand
14 March 2022

Get a taste of all the GTN has to offer!

Online, GlobalTraining offered by GTN Member Saskia Hiltemann & Helena Rasche
10 March 2022

online
7 March 2022

Applications close 31 December

EMBL-EBI, Online, Hinxton, United Kingdom Dayane Araújo, Wendi Bacon
3 March 2022

The last 13 weeks have been spent with Outreachy interns, Chinonye Mildred Egenti and Rahmot Afolabi, under the mentorship of Bérénice Batut and Assunta DeSanto to create the Galaxy Mentor Network and her mentoring program.

Chinonye Mildred Egenti, Rahmot Afolabi, Bérénice Batut, Assunta DeSanto
21 February 2022Galaxy HTS data analysis workshop for CRC 1425, CRC 992 and MeInBio members

Workshop on high-throughput data analysis. This is an online course and is limited to the members CRC 1425, CRC 992 and MeInBio.

onlineTraining offered by GTN Member Freiburg Galaxy Team
20 January 2022Galaxy Papercuts CoFest Day

A community contribution day

Online, Global Community
18 January 2022Small Scale Galaxy Admins Meeting

Online, Global Hans-Rudolf Hotz
17 January 2022

Register by December 15

Station Biologique de Roscoff, FranceTraining offered by GTN Member Loraine Guéguen, Erwan Corre
9 December 2021

online
1 December 2021SARS-CoV-2 Data Analysis and Monitoring with Galaxy

...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...

University of Freiburg, New England Biolabs, OnlineTraining offered by GTN Member Instructors
1 December 2021SARS-CoV-2 Data Analysis and Monitoring with Galaxy

online
1 December 2021

A 3-day training course on bioinformatics methods for de novo assembly and structural and functional annotation of genomes using short (Illumina) and long reads (PacBio / Oxford Nanopore) sequencing technologies (will be run in french).

Station Biologique, Roscoff, FranceTraining offered by GTN Member Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Stéphanie Robin
30 November 2021

GOBLET, ELIXIR
29 November 2021

Learn to work with NGS data of 16S, 18S, ITS … DNA using our Galaxy instance and the FROGS pipeline.

INRA, Toulouse-Auzeville, FranceTraining offered by GTN Member
29 November 2021

Curso de análisis de células únicas usando Galaxy en español.

Virtual y asincrónico, Global Stefana Dreptate, Wendi Bacon
25 November 2021Galaxy Metabolomics Community Call

Recent developments and future plans in the Galaxy Metabolomics community, including a summary of the metaRbolomics Hackathon.

online Melanie Foell
18 November 2021Galaxy Papercuts CoFest Day

A community contribution day

Online, Global Community
16 November 20215. NRZ-Authent Expertinnen- und Expertenworkshop

Der 5. NRZ-Authent Expertinnen- und Expertenworkshop widmet sich den Projekten im Bereich Authentizität an verschiedenen Forschungseinrichtungen sowie dem Schwerpunktthema Datenbanken.

Training offered by GTN Member
11 November 2021Separated data PVC: How it works and potential missed implications; and 21.09 Release Testing

Join the discsussion (Slides: 21.09 Release Testing)

Galaxy Developer Roundtable, Online, Global Alexandru Mahmoud, Keith Suderman
9 November 2021

CSIR-North East Institute of Science & Technology
8 November 2021Galaxy @ BioHackathon-Europe 2021

Advance the development of an open-source infrastructure for data integration

Barcelona + Online, Spain Project organizers
4 November 2021

Open to everybody interested in Genome Annotation or Galaxy

ELIXIR Czech Republic, CzechiaTraining offered by GTN Member Martin Čech, Petr Novák
2 November 2021

Anne Fouilloux
1 November 2021

Course is full

Earlham Institute, Virtual, United KingdomTraining offered by GTN Member Emily Angiolini
28 October 2021Image analysis in Galaxy - pain points and lessons learnt

Join the discussion. (Video, Slides)

Galaxy Developer Roundtable, Online, Global Yi Sun, Jean-Karim Hériché
22 October 2021

Gallantries Project: Delivering Galaxy hybrid events, and evolving with the pandemic

EOSC-Life training series, Online, Europe Helena Rasche
22 October 2021

Talk showcasing the image analysis capabilities of Galaxy.

Euro-BioImaging Virtual Pub, Online, Europe Beatriz Serrano-Solano
21 October 2021Galaxy Papercuts CoFest Day

A community contribution day

Online, Global Community
20 October 2021

Organised by the Galaxy Proteomics communities in the US, Australia and Europe.

International Galaxy Proteomics Meeting Series, Online, Global Johan Gustafsson, Grace Hall, Pratik Jagtap
19 October 2021

Savoir utiliser l'environnement Galaxy

Bordeaux, FranceTraining offered by GTN Member A. Barré, B. Dartigues, R. Uricaru
11 October 2021

UMR Toxalim, INRAE, Toulouse, France
23 September 2021

microGalaxy is a new community focusing on microbial analysis with Galaxy

Online, Freiburg, Germany Bérénice Batut
16 September 2021Galaxy Papercuts CoFest Day

A community contribution day

Online, Global Community
14 September 2021

Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Mahendra Mariadassou, Cedric Midoux, Olivier Rué
8 September 2021

Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Veronique Martin
6 September 2021Hackathon: Annotated Research Context (ARC) as a FAIR digital object

Build use and support ARCs with new tools, templates, and ideas.

Villa Denis, Frankenstein, Germany DataPLANT project
9 August 2021SARS-CoV-2 Data Analysis and Monitoring with Galaxy

...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...

onlineTraining offered by GTN Member
29 July 2021Utilization of a Galaxy-based workflow to support decision making in molecular cancer diagnostics

online (https://uk-erlangen.webex.com/uk-erlangen/j.php?MTID=mfa8088026974da77de04e981fb3b7abd) Pilot Core Unit Bioinformatics, Data Integration and Analysis, Universitätklinikum Erlangen
25 July 2021Galaxy @ ISMB/ECCB 2021 & BOSC 2021

Lyon, Online, France Presenters
15 July 2021NFDI4BIOIMAGE community meeting 2021

online (https://nfdi4bioimage.de/en/get-involved/community-meeting-2021/) NFDI4BI
12 July 2021Galaxy-E at SORTEE 2021

Open, reliable, and transparent ecology research with Galaxy-E

SORTEE 2021, Online, GlobalTraining offered by GTN Member Yvan Le Bras
28 June 2021

online
24 June 2021Introduction to Galaxy - a web-based platform for bioinformatics analysis

online (https://uk-erlangen.webex.com/uk-erlangen/j.php?MTID=mfa8088026974da77de04e981fb3b7abd) Pilot Core Unit Bioinformatics, Data Integration and Analysis, Universitätklinikum Erlangen
21 June 2021

17 June 2021June GCC2021 CoFest Prep Day

GCC Cofest prep is pre-empting the June Papercuts day

Online, Global GCC2021 CoFest Organizers
11 June 2021

Showcasing the image analysis capabilities of Galaxy.

OME Community Meeting, Online, Global Beatriz Serrano-Solano
7 June 2021

Register by 14 April (Video)

Holistic Bioinformatic Approaches used in Microbiome Research, Online, Global Bérénice Batut
3 June 2021ELIXIR 2021 All Hands

online
28 May 2021

Gathering the Dutch Galaxy Community

Online, The Netherlands Saskia Hiltemann
28 May 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Valentin Loux, Hélène Chiapello
27 May 2021Release Testing

What's changed recently, and what's involved (Video, Slides)

Galaxy Developer Roundtable, Online, Global Keith Suderman, Dave Bouvier, David López, Qiang Gu, Vijay Nagampal, Marius van den Beek
27 May 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Valentin Loux, Jean-François Gibrat, Thomas Lacroix
26 May 2021Galaxy Resources for Administrators & Infrastructure Providers

Part of the Galaxy Resources Webinar Series (Slides, Video)

Galaxy Resources Webinar Series, Online, Global Gianmauro Cuccuru, Lucille Delisle
25 May 2021

Introduction to basic concepts and tools from the ASaiM-MT workflow.

VIB, Online, Ghent, BelgiumTraining offered by GTN Member Pratik Jagtap, Subina Mehta, Tim Griffin, Magnus Arntzen, Saskia Hiltemann
25 May 2021

Full. Theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. (Register)

Institute of Plant Molecular Biology, Online, Ceske Budejovice, Czech Republic Jiří Macas
20 May 2021Galaxy Papercuts CoFest Day: May 20

A community contribution day

Online, Global Community
13 May 2021Customizeable welcome and introduction page for new Galaxy users

Giving new users some obvious guidance when they first arrive. (Video, Slides)

Galaxy Developer Roundtable, Online, Global Alex Ostrovsky
12 May 2021Galaxy Resources for Tool Developers

Part of the Galaxy Resources Webinar Series (Video, Ecosystem slides, Docker slides, Server slides)

Galaxy Resources Webinar Series, Online, Global Dan Blankenberg, Anthony Bretaudeau, Petr Novak
6 May 2021Galaxy Metabolomics Community Call

online Melanie Foell
4 May 2021

Savoir utiliser l'environnement Galaxy

Bordeaux, FranceTraining offered by GTN Member A. Barré, B. Dartigues, R. Uricaru
29 April 2021Scalability and Challenges

(Slides, Video)

Galaxy Developer Roundtable, Online, Global Aysam Guerler
28 April 2021

SIB Training, Lausanne, Switzerland
28 April 2021Galaxy Resources for Educators & Trainers

Part of the Galaxy Resources Webinar Series (Video, Slides 1, Slides 2)

Galaxy Resources Webinar Series, Online, Global Saskia Hiltemann, Subina Mehta, Christine Cucinotta, Miaomiao Zhou, Bérénice Batut
26 April 2021

online
22 April 2021

immuneML is a platform for the analysis of adaptive immune receptors through machine learning. (Video)

RSG-Norway, Online, Norway Lonneke Scheffer, Milena Pavolović
21 April 2021Galaxy Resources for Researchers

Part of the Galaxy Resources Webinar Series (Slides, Video)

Galaxy Resources Webinar Series, Online, Global Dave Clements
19 April 2021

...with a special focus on bulk and single-cell RNA-Seq data analysis...

University of Freiburg, Online, Freiburg, GermanyTraining offered by GTN Member Instructors
16 April 2021

a high level overview of the Galaxy Project - what it is, what it does and how to start using it. And the Elixir Galaxy and currently forming Galaxy Czech communities (Slides)

ELIXIR CZ, Online, Czech Republic Martin Čech
15 April 2021Galaxy Papercuts CoFest Day: April 15

A community contribution day

Online, Global Community
13 April 2021

Online course by ELIXIR Norway

ELIXIR Norway, Online, NorwayTraining offered by GTN Member ELIXIR Norway
12 April 2021

Next generation sequencing for RNA-Seq and Epigenetics

de.NBI / de.STAIR, Online, GermanyTraining offered by GTN Member Steffen C. Lott, David Brauer, Markus Wolfien, Maximilian Hillemanns, Konstantin Riege
7 April 2021

Online course by ELIXIR Norway

ELIXIR Norway, Online, NorwayTraining offered by GTN Member ELIXIR Norway
6 April 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Mahendra Mariadassou, Cedric Midoux, Olivier Rué
24 March 2021Speed up your data analysis with Galaxy: Features no one knows about

online Galaxy and ELIXIR
23 March 2021

Online course by ELIXIR Norway

ELIXIR Norway, Online, NorwayTraining offered by GTN Member ELIXIR Norway
18 March 2021Bringing GPU support to Galaxy

Progress towards executing GPU applications in Galaxy (Video)

Galaxy Developer Roundtable, Online, Global Jashwant Raj, Gulsum Gudukbay
18 March 2021Galaxy Papercuts CoFest Day: March 18

A community contribution day

Online, Global Community
17 March 2021Galaxy bridge to Jupyter notebooks and RStudio

Jupyter Notebooks and RStudio in combination with Galaxy workflows (Video, Slides)

online Galaxy and ELIXIR
17 March 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Cyprien Guérin, Valentin Loux, Christelle Hennequet-Antier, Julie Aubert
10 March 2021Processing thousands of datasets simultaneously

online Galaxy and ELIXIR
10 March 2021

Galaxy collections and advanced collections features (Register)

Galaxy-ELIXIR Advanced Features webinar series, Online, Europe Wolfgang Maier, Anton Nekrutenko
4 March 2021Release Testing

What's changed recently, and what's involved (Slides, Video)

Galaxy Developer Roundtable, Online, Global Sergey Golitsynskiy, David López, Assunta DeSanto, Keith Suderman, John Chilton
3 March 2021Advanced Galaxy workflow features

From parameter sweeping to automatic reports (Slides, Video)

online Galaxy and ELIXIR
25 February 2021GTN CoFest & Galaxy Paper Cuts

online
24 February 2021DRS, long-read-sequencing, proteomics and more - An update to recent COVID-19 workflow developments

online Galaxy and ELIXIR
17 February 2021Viral Beacon and Galaxy variant workflows

online Galaxy and ELIXIR
17 February 2021

Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, Online, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Valentin Loux, Cédric Midoux
16 February 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, FranceTraining offered by GTN Member Olivier Inizan, Mouhamadou Ba
15 February 2021GTN Smörgåsbord: A Global Galaxy Course

Get a taste of all the GTN has to offer!

Online, GlobalTraining offered by GTN Member Saskia Hiltemann & Helena Rasche
10 February 2021Insights from selection analysis of complete genomes and read-level data

online Galaxy and ELIXIR
4 February 2021Galaxy Developer Training & Onbarding; GTN Update

How to grow the Galaxy Developer community? Admin Training Update (Slides, Video)

Galaxy Developer Roundtable, Online, Global Dannon Baker, Beatriz Serrano-Solano, Dave Clements, Saskia Hiltemann, Helena Rasche
3 February 2021Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA

online Galaxy and ELIXIR
29 January 2021Galaxy Metabolomics Mini-Symposium

online Melanie Föll
29 January 2021Galaxy Metabolomics Mini-Symposium

Recent developments and future plans in the Galaxy Metabolomics community

Freiburg, Online, Germany Melanie Föll, Beatriz Serrano-Solano
27 January 2021Importance of (open) infrastructures in responding to a pandemic

online Galaxy and ELIXIR
25 January 20212021 Galaxy Admin Training

The ins and outs of setting up your own production quality Galaxy server.

Online, GlobalTraining offered by GTN Member Instructors
21 January 2021Galaxy Developer Roundtable: FastAPI

(Video)

Online, Global Marius van den Beek
21 January 2021Galaxy Papercuts CoFest Day: January 21

A community contribution day

Online, Global Community
20 January 2021COVID-19 analysis in Galaxy: Lessons learned and introduction to the series

online Galaxy and ELIXIR
7 January 2021Galaxy Working Groups Follow Up and Discussion

How are we doing after a month? (Video)

Galaxy Developer Roundtable, Online, Global Björn Grüning, Anton Nekrutenko
17 December 2020Galaxy Papercuts CoFest Day: December 17

A community contribution day

Online, Global Community
10 December 2020Galaxy Working Groups: Distributing project guidance to the community

Distributing Galaxy Guidance: Working Groups (Video)

Galaxy Developer Roundtable, Online, Global Björn Grüning, Anton Nekrutenko
10 December 2020First Metabolomics Community Call

Bringing together Galaxy metabolomics researchers, users and developers, to discuss needs, ideas, ...

online Melanie Foell
9 December 2020Webinar: Use Galaxy on the web, the cloud, and your laptop too

Options for using Galaxy: everywhere and right now (Slides, Video)

Online, Global Enis Afgan, Anton Nekrutenko, Michael Schatz
7 December 2020Hackathon sur les outils interactifs de Galaxy (GxIT)

Learn and share software development and system administration skills of [Galaxy Interactive Tools](https://docs.galaxyproject.org/en/master/admin/special_topics/interactivetools.html).

online geoc@groupes.renater.fr
3 December 2020

Label-free Proteomics data analysis in Galaxy

VIB, Online, Ghent, BelgiumTraining offered by GTN Member Melanie Föll, Matthias Fahrner
19 November 2020

Galaxy Training Network
19 November 2020Galaxy Training Network day - (online) CoFest and community call

Online, GlobalTraining offered by GTN Member Saskia Hiltemann & Helena Rasche
18 November 2020Galaxy Paper Cuts Day: November 18

A community contribution day

Online, Global Community
12 November 2020Working with the Galaxy Training Network

Galaxy Training Network (Video)

Galaxy Developer Roundtable, Online, Global Helena Rasche and Saskia Hiltemann
9 November 2020ELIXIR BioHackathon Europe

online
3 November 2020Diving into the Galaxy: an accessible and reproducible workbench with an European-wide distributed compute network

online EGI
29 October 2020Galaxy Developer Roundtable

Tool testing and tool deployment discussion (Video)

Online, Global Dannon Baker, John Chilton, Marius van den Beek
28 October 2020RNA-seq Analysis using Galaxy

online Freiburg Galaxy Team
26 October 2020Galaxy Training on Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

Learn about Galaxy and how to compose and execute repeatable and reproducible modelling workflow with FATES for improving climate models.

online Anne Fouilloux
26 October 2020Machine Learning in Bioinformatics using Galaxy at ISCB-LA 2020

(Video1, Video2, Video3, Video4)

onlineTraining offered by GTN Member Freiburg Galaxy Team
21 October 2020Galaxy Paper Cuts Day

A community contribution day

Online, Global Community
15 October 2020Galaxy release testing and publishing workflows to Dockstore and Workflowhub

(Video)

Online, Global Sergey Golitsynskiy, Marius van den Beek
15 October 2020

online
12 October 2020

Bridging the gap between climate scientists and non-climate specialists

JupyterCon, Online, Europe Anne Fouilloux
8 October 20203rd de.NBI Cloud User Meeting Online

online
1 October 2020Galaxy Developer Roundtable

online
17 September 2020Galaxy Developer Roundtable

online
8 September 2020The ELIXIR Tools Platform - solutions for COVID-19 research

online Freiburg Galaxy Team
2 September 2020Workshop on FAIR Computational Workflows

Online Freiburg Galaxy Team
2 September 2020An Introduction to Whole Exome Data Analysis using Galaxy

online Freiburg Galaxy Team
31 August 2020Machine Learning & Omics data at ECCB2020

online Freiburg Galaxy Team
30 July 2020Galaxy Africa Community Update

Online
19 July 2020High-throughput molecular dynamics with Galaxy

Online Freiburg Galaxy Team
19 July 2020Processing of Single Cell RNA-Seq Data with Galaxy

Online Freiburg Galaxy Team
18 July 2020Workshop on Tool Packaging at BCC2020

online EOSC-Life-WP2
18 July 2020Introduction to Machine Learning at BCC2020

online Freiburg Galaxy Team
18 July 2020Reference data with CVMFS and remote jobs with Pulsar

Online Freiburg Galaxy Team
17 July 2020Processing of Single Cell RNA-Seq Data with Galaxy

Online Freiburg Galaxy Team
17 July 2020Biocontainers at the nf-core Hackathon

online Freiburg Galaxy Team
15 July 2020Machine Learning in Bioinformatics using Galaxy at IISA2020

online Freiburg Galaxy Team
22 June 2020Galaxy-ELIXIR Webinar/Workshop: Machine Learning using Galaxy

Register by 16 June

onlineTraining offered by GTN Member Freiburg Galaxy Team and ELIXIR
28 May 2020Galaxy-ELIXIR Webinar 5: Behind the scenes - Global Open Infrastructures at work

Galaxy and ELIXIR
20 May 2020Galaxy-ELIXIR Webinar 4: Evolution of the Virus

online Galaxy and ELIXIR
19 May 2020Online Galaxy Introduction Workshop

online Freiburg Galaxy Team
14 May 2020Galaxy-ELIXIR Webinar 3: Cheminformatics - Screening of the main protease

online Galaxy and ELIXIR
7 May 2020Galaxy-ELIXIR Webinar 2: Genomics/Variant Calling

online Galaxy and ELIXIR
30 April 2020Galaxy-ELIXIR Webinar 1: Introduction to Galaxy and the Galaxy workflows for SARS-CoV-2 data analysis

online Galaxy and ELIXIR
28 April 2020ELIXIR Bioinformatics Industry Forum

online
8 April 2020Online Galaxy Introduction Workshop

online Freiburg Galaxy Team
30 March 2020EVENT POSTPONED - Introduction to machine learning using Galaxy

PC Pool 3 Freiburg Galaxy Team
23 March 2020EVENT POSTPONED - Galaxy single cell RNA-seq data analysis workshop in Freiburg

PC Pool 3 Freiburg Galaxy Team
23 March 2020CANCELED - 2-day proteomics and RNA-seq Galaxy course in Freiburg

Institute for Biology II/III IMMZ
20 March 2020WirVsVirus Hackathon

online Bundesregierung
20 March 2020

Looking for bold and innovative ideas that will help society to show solidarity now and emerge stronger

Online, GermanyTraining offered by GTN Member Organizers
6 March 2020Blended training event (Norway/Sweden) on the use of Climate data and Copernicus Climate Data Store

Use climate data to develop climate services for adaptation challenges.

Oslo Forskningsparken, Oslotech AS Copernicus Climate Service
2 March 20202020 Galaxy Admin Training

Barcelona Supercomputing Center
29 February 2020Galaxy @ ABRF 2020

Single Cell, and Functional Characteristics of Microbiomes

ABRF 2020, Palm Springs, California, United StatesTraining offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Saskia Hiltemann, Subina Mehta, Mehmet Tekman
25 February 2020Galaxy RNAseq workshop

Freiburg Galaxy Team
17 February 2020Galaxy HTS data analysis workshop in Freiburg

1-week full-day hands-on workshop on analysis of RNA-seq, ChIP-seq, Exome-seq, MethylC-seq data

PC Pool 100Training offered by GTN Member Freiburg Galaxy Team & MPI Freiburg
6 February 2020Talk at the ELIXIR Open Day

EMBL/EBI ELIXIR
21 January 2020Introduction to Galaxy

Freiburg Galaxy Team
21 November 2019Galaxy Training Network day - (online) CoFest and community call

Online Saskia Hiltemann
18 November 2019Elixir Biohackathon 2019

Campus des berges de Seine Elixir, Elixir-FR
9 October 2019Galaxy for linking Bisulfite sequencing with RNA sequencing

Albert-Ludwigs-Universität Freiburg de.STAIR
7 October 2019

The Gallantries team is offering its second RNA-seq workshop for beginners on October 7-9th. This workshop will be delivered simultaneously at 3 locations across Europe (Rotterdam, NL; Thessaloniki, GR; Tartu, EE).

Rotterdam, The Netherlands; Thessaloniki, Greece; Tartu, EstoniaTraining offered by GTN Member Berenice Bbatut
2 October 2019Metabolomics tool development workshop

ELIXIR
30 September 2019Bioconda Collaboration Fest

Join us in Freiburg, join other events or organise your own local Bioconda Collaboration Fest

Building 079 Freiburg Galaxy Team & MPI Freiburg
24 September 2019

European Commission's Joint Research Centre in Ispra
23 September 2019Galaxy HTS data analysis workshop in Freiburg

We are offering a Galaxy beginner workshop on high-throughput data analysis.

PC Pool 3 Freiburg Galaxy Team & MPI Freiburg
19 September 2019Microscopy Image Analysis Course

Universität Heidelberg Heidelberg Center for Human Bioinformatics (HD-HuB)
12 September 2019Galaxy Training Network day - (online) CoFest and community call

Online Bérénice Batut
10 September 2019Join our talk about the European Galaxy server in Freiburg!

BIOSS center at University of Freiburg
8 September 2019RNA-Seq data analysis with Galaxy for clinical applications

Fachhochschule Dortmund Beatrix Behrendt
3 September 20192nd de.NBI Cloud User Meeting

Bioquant Heidelberg University de.NBI Cloud Group
11 June 2019

The Gallantries team is offering its first RNA-seq workshop for beginners on June, 11-12th. It will be delivered simultaneously at two locations across Europe (Rotterdam, NL and Freiburg, DE).

Training offered by GTN Member Berenice Batut
16 May 2019GTN CoFest and community call

Online Bérénice Batut, Saskia Hiltemann
7 May 2019

Wellcome Collection Katharina Lauer (ELIXIR)
23 April 2019Galaxy training and hackathon at Roscoff/France

Station Biological De Roscoff Gildas Le Corguillé (ELIXIR-FR, IFB)
13 March 2019Miracum whole-exome sequencing pipeline workshop in Freiburg

Institute for Biology II/III Freiburg Galaxy Team & AG Boerries
25 February 2019Galaxy HTS data analysis workshop in Freiburg

Institute for Biology II/III Freiburg Galaxy Team & MPI Freiburg
21 February 2019GTN CoFest and call on Galaxy Training Material

Online Bérénice Batut, Saskia Hiltemann
28 January 20192019 Galaxy Admin Training

Penn State University
17 January 2019Galaxy RNA-seq data analysis workshop in Belgrad

Institute of Nuclear Sciences Vinca, Mike Petrovica Alasa Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences Vinca, University of Belgrade, Serbia
6 December 2018Galaxy RNA-seq data analysis workshop in Freiburg

Institute for Biology II/III Freiburg Galaxy Team
19 November 2018European Galaxy Days

Building 101 Freiburg Galaxy Team
15 November 2018GTN CoFest on Training Material

Galaxy Training Network
4 October 2018Elixir Galaxy Proteomics Workshop in Prague

Institute of Organic Chemistry and Biochemistry ELIXIR CZ, IOCB Prague
25 September 2018GCB 2018

17 September 2018Galaxy HTS data analysis workshop in Freiburg

Institute for Biology II/III Freiburg Galaxy Team
26 June 2018Galaxy Community Conference / BOSC

Galaxy Team
25 June 2018Galaxy Community Conference and Bioinformatics Open Source Conference

17 June 2018ELIXIR 2019 All Hands

4 June 2018ELIXIR 2018 All Hands

30 May 2018CarpentryCon

21 May 2018Workshop for Galaxy training material and skills improvement

Nicola Soranzo
3 April 2018Galaxy Africa

SANBI
15 March 2018Galaxy User Conference

de.NBI
14 March 2018ELIXIR Galaxy kick-off meeting in Freiburg

Building 106
26 February 2018Galaxy HTS data analysis workshop in Freiburg

Institute for Biology II/III Freiburg Galaxy Team
8 January 2018European galaxy administrator workshop in Norway

ELIXIR
4 December 2017VRE deployment workshop

30 November 2017Practical computational reproducibility in the life sciences

Freiburg Galaxy Team
6 November 2017ViCE Workshop on Provisioning of Virtual Research Environments and Data Management

Rechenzentrum Freiburg ViCE
19 October 2017de.NBI Symposium

de.NBI Heidelberg
18 October 2017Software Carpentry Workshop

EMBL
16 October 2017MetaboFlow

Wellcome Trust
9 October 2017BioContainers Hackathon

ELIXIR Europe
4 October 2017A Primer for RNA-Seq Processing, Interpretation and Visualization

de.STAIR
25 September 2017de.NBI Summer School 2017 - Computational genomics and RNA biology

de.NBI RBC Freiburg, Berlin, Leipzig
18 September 2017Bioinformatics Galaxy workshop

Freiburg Galaxy Team
25 July 2017Bioconda, BioContainer & Galaxy: enabling sustainable bioinformatic infrastructure

Black Forest Summer School
22 July 2017BOSC

BOSC
21 July 2017ISMB/ECCB

ISMB ECCB
28 June 2017Galaxy Community Conference (GCC) 2017

1 June 2017Repro Hackathon

Université Paris-Saclay Freiburg Galaxy Team
22 May 2017ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use

University of Cambridge ELIXIR, GOBLET, GTN
4 April 2017de.NBI - ELIXIR AAI Codefest - Make your services accessible via ELIXIR AAI

Freiburg Galaxy Team
28 March 2017GCB 2017

GCB
28 March 2017MIRACUM webinar

online Freiburg Galaxy Team
15 March 2017ELIXIR webinar Bioconda and BioContainers

online Freiburg Galaxy Team
9 March 2017Software Carpentry workshop

Freiburg Galaxy Team
23 February 2017Bioconda & BioContainers

Freiburg Galaxy Team
13 February 2017Data analysis with Galaxy 2017/1

Freiburg Galaxy Team
2 February 2017GAMe - Galaxy Australasia Meeting

EMBL Australia EMBL Australia
26 January 2017Galaxy RNAseq and admin workshop

Freiburg Galaxy Team
16 January 2017European Galaxy Developer Workshop

Freiburg Galaxy Team
9 January 2017Galaxy QIIME codefest

online Freiburg Galaxy Team
16 December 2016Galaxy admin meet up

online usegalaxy.org
15 December 2016Galaxy Workshop specialized on RNA-sequencing data analysis

Freiburg Galaxy Team
1 December 20163rd Systems Biology Developers Foundry by FAIRDOM & de.NBI

de.NBI, FAIRDOM
20 November 2016Introduction to Galaxy

Building 106 Freiburg Galaxy Team
7 November 2016International de.NBI-Symposium "Bioinformatics for Human Health & Disease"

de.NBI
2 November 2016Bioconda Contribution Fest

online Freiburg Galaxy Team
24 October 2016Reproducibility, standards and SOP in bioinformatics

NETTAB
20 October 2016Swiss German Galaxy Workshop

Building 101 Freiburg Galaxy Team
6 October 2016The Galaxy Training Network contribution fest

Freiburg Galaxy Team
6 October 2016Galaxy training material hackathon

online Freiburg Galaxy Team
27 September 2016GalaxyP & Conda packaging hackathon

online Freiburg Galaxy Team
19 September 2016Galaxy workshop on HTS data analysis

Institute for Biology II/III Freiburg Galaxy Team
13 September 2016Analyze more, process less: Galaxy in Freiburg

Black Forest Summer School
13 September 2016GCB 2016

Freie Universität Fachgruppe Bioinformatik & Freie Universität Berlin
3 September 2016European Conference on Computational Biology (ECCB) 2016

EBI
1 September 2016HEC Bioinf workshop 2016

Freiburg Galaxy Team
25 July 2016RBC kick-off meeting & hackathon

Building 101 Freiburg Galaxy Team
25 June 2016Galaxy Community Conference (GCC) 2016

Galaxy Team
18 May 2016MIOSS 2016

EMBL/EBI EMBL/EBI
18 April 2016HPC workshop

Freiburg Galaxy Team
6 April 2016Galaxy DevOps workshop

Freiburg Galaxy Team
4 April 2016Conda workshop

online Freiburg Galaxy Team
8 March 2016Hackathon on RADseq Tools and Workflows

online IUC
22 February 2016Galaxy workshop on HTS data analysis

Institute for Biology II/III Freiburg Galaxy Team
19 January 2016de.NBI - EDAM Codefest: ELIXIR Tools and Services Registry Resource hackathon

Building 101 Freiburg Galaxy Team