Beyond the Galaxy Event Horizon

Listing of Galaxy events from previous years. See the main Galactic Events page for current and recent events.

2016

Biodiversity Knowledge Integration Center  Galaxy @ Plant and Animal Genome (PAG 2016)   An introduction to clinical bioinformatics NGS Data Analysis in Galaxy (CTMM-TraIT course) QFAB Workshops Initiation à l’environnement UNIX et à la plateforme GALAXY   BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo)   Analyse bioinformatique de séquences sous Galaxy   18 February GalaxyAdmins Web Meetup   (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics IUC Contribution Fest - RADSeq Tools and Workflows /Training and knowledge-exchange for ELIXIR Galaxy service providers Le cycle "Bioinformatique par la pratique" 2016 Introduction à l'analyse de données RNAseq sous Galaxy   Galaxy DevOps Workshop - Galaxy and Galaxy tools deployment strategies   21 April GalaxyAdmins Web Meetup: The Galaxy Portal: Accessing Galaxy from Mobile Devices   Workshop on Galaxy: Practical Course   NGS Bioinformatics Data Analysis Workshop Galaxy Workshop Tokyo 2016   QFAB Workshops NGS & Cancer : Analyses RNA-Seq RNA-Seq and DNA-Seq Cancer Analyses Cycle d'aprentissage sous Galaxy   RNA-Seq Analysis and Variatnt Analysis Using Galaxy 64th ASMS Conference on Mass Spectrometry and Allied Topics Informatics on High-throughput Sequencing Data Workshop GVL and Galaxy Workshops 16 June GalaxyAdmins Web Meetup Introduction to Galaxy Workshop     2016 Galaxy Community Conference (GCC2016)     GMOD Meeting BOSC 2015 ISMB 2016 An Introduction to Using Galaxy for Genetic Data Analysis @ TAGC    Galaxy @ XSEDE'16    University of Rochester    Integrating Ontological and Genomic Analysis with Galaxy Workshop @ ICBO    Introduction to Galaxy Workshop     GalaxyAdmins Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants Galaxy @ ECCB 2016 Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics NGS Course: RNA-seq data analysis Galaxy-P Conda hackathon GalaxyによるNGSデータ解析 (Galaxy NGS Data Analysis BoF)   Galaxy Training Contribution Fest   Metagenomic: amplicon analysis   Galaxy Workshop  Galaxy4Bioinformatics 2016 Swiss German Galaxy Tour Galaxy @ NETTAB 2016       Galaxy Project Admin Training 15 December GalaxyAdmins Web Meetup  



Date Topic/Event Venue/Location Contact Links
December 15-16 Metaproteomics CodeFest Online Online Pratik Jagtap, Björn Grüning
December 15-16 Galaxy RNA-sequencing data analysis workshop Europe Freiburg, Germany Training offered by GTN Member Freiburg Galaxy Team
December 15 Galaxy Training Materials / The new Galaxy Community Hub: Community creation, curation, and use Online GalaxyAdmins Meetup, Online Björn Grüning, Bérénice Batut, Dannon Baker
December 8 The Community Hub Contribution Convergence (CHCC) Around the world Online Dannon Baker, Dave Clements
December 6 Reproducible Science in Bioinformatics: Current Status, Solutions and Research Opportunities Around the world Grenoble, France, and Online Sarah Cohen Boulakia, Yvan Le Bras and Bruno Chopard
November 28 - December 2 Traitement des donnéesmétabolomiques sous Galaxy
Les pré-inscriptions sont ouvertes jusqu'au 15 juillet 2016
Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Contact
November 28-30 Analyse avancée de séquences Europe Bordeaux, France Macha Nikolski
November 29 Genome Assembly and Annotation Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw
November 20-25 Ecole Bioinformatique AVIESAN Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Email
November 21-23 Annotation of transposable elements Europe URGI, INRA Versailles, France Contact
November 21 Pasteur_galaxy: An open and sustainable Galaxy instance for NGS data analysis SouthAmerica ISCB-Latin America, Buenos Aires, Argentina Oussama Souiai
November 8-20 Advanced Sequencing Technologies & Applications
Application deadline is July 15
North America Cold Spring Harbor Laboratory, New York, United States
Training offered by GTN Member
Jeremy Goecks
November 16 Quality Control of Next Generation Sequencing Reads Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw
November 16 Large-scale analytical workflows on the cloud using Galaxy and Globus Around the world Online, Scotland, United Kingdom Ravi Madduri
November 16 Introduction to Galaxy Workshop North America University of Utah, Salt Lake City, Utah, United States
Training offered by GTN Member
Dave Clements
November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy Europe PRABI, Lyon, France Contact
November 9-11 Galaxy Admin Training: Advanced North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors
November 11 Introduction to the GVL and Galaxy Australia University of Melbourne, Melbourne, Victoria, Australia
Training offered by GTN Member
VLSCI
November 7-9 NGS & Cancer : Analyses ChIP-Seq
Workshop is full
Europe Paris, France Cancéropôle Île-de-France
November 7-9 Tool deployment and sustainability in bioinformatics – fixed! Europe Bioinformatics for Human Health and Disease, Heidelberg, Germany Bérénice Batut
November 7-8 Galaxy Admin Training: Introduction North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors
November 2-3 Bioconda Contribution Fest Around the World Online Björn Grüning
October 25-27 The Galaxy tool lifecycle supporting reproducibility in scientific research Europe NETTAB 2016 / EMBNet Joint Meeting on Reproducibility in Bioinformatics, Rome, Italy Dannon Baker, Björn Grüning
October 24 Deployment of bioinformatics tools and services through Docker Europe ELIXIR Hackathon @ NETTAB 2016, Rome, Italy Paolo Romano, Jon Ison
October 20-21 BioExcel: Workflow Training for Computational Biomolecular Research Europe Barcelona Supercomputing Center, Barcelona, Spain Antonio Miguel Espinosa Morales
October 21 (second German) Galaxy Developers Day Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening
October 20 Genome Program Joint Workshop Asia Kunsan National University, Gunsan, South Korea Anton Nekrutenko
October 20 (third Swiss) Galaxy Workshop Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening
October 18-20 Galaxy4Bioinformatics Europe Lyon, France
Training offered by GTN Member
Contacts
October 10-13 Metagenomic: amplicon analysis
Registration closes 4 October
Europe INRA Auzeville, Auzeville, France
Training offered by GTN Member
Sarah Maman
October 13 Galaxy Workshop
Workshop is full
Europe Copenhagen, Denmark Jose Maria (Txema) Gonzalez Izarzugaza
October 10 Omics Data Services Platform: Supporting bacterial pathogen multi omics analysis Australia International Workshop on Science Gateways, Melbourne, Australia Andrew Lonie
October 10 Microbial Genomics Virtual Laboratory: Supporting bacterial pathogen multi omics analysis Australia International Workshop on Science Gateways, Melbourne, Australia Simon Gladman
October 6-7 Galaxy Training Contribution Fest Around the World Online Björn Grüning
October 5 Galaxy-qld Meetup Australia UQ St Lucia campus, Queensland, Australia Igor Makunin Slides
September 29 - October 1 GalaxyによるNGSデータ解析 (Galaxy NGS Data Analysis BoF) Asia 第5回生命医薬情報学連合大会 (IIBMP 2016), Tokyo, Japan Ryota Yamanaka, Tazra Ohta Slides
September 28 BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ Around the World ELIXIR Webinar Olivier Sallou Slides & video
September 27-28 Galaxy-P Conda hackathon Around the World Online Pratik Jagtap
September 26-28 NGS Course: RNA-seq data analysis Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder
September 19-23 High Throughput Sequencing (HTS) Data Analyses for Scientists
This workshop is full
Europe Freiburg, Germany
Training offered by GTN Member
Contact
September 19-22 Streamlined analysis of duplex sequencing data with Du Novo Europe Genome Informatics 2016, Hinxton, United Kingdom Nick Stoler
September 19-20 Exome analysis using Galaxy Europe Milano, Italy
Training offered by GTN Member
Paolo Uva, Gianmauro Cuccuru
September 12-16 The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy E Thévenot
September 12-16 Summer School 2016 in Metagenomics Europe Institut Pasteur, Paris, France Contacts
September 3-7 European Conference on Computational Biology (ECCB 2016) Europe The Hague, Netherlands See presenters Presentations
August 29 - September 2 Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program
August 22-26 A Framework for Accessible Cluster-enabled Epistatic Analysis Europe Euro-PAr 2016, Grenoble, France Alex Upton Paper
August 18 GalaxyAdmins Web Meetup Around the World Online Nick Hazekamp, Hans-Rudolf Hotz, Dave Clements Slides
August 17 Galaxy Workshop Australia St Lucia campus, University of Queensland, Australia Igor Makunin
August 12 Introduction to Galaxy Workshop Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
August 9-10 Introduction to Galaxy Workflows North America Workflows Workshop, Distributed
Training offered by GTN Member
Dave Clements
Slides
August 1-4 Integrating Ontological and Genomic Analysis with Galaxy Workshop North America ICBO 2016, Corvallis, Oregon, United States
Training offered by GTN Member
Dave Clements
Tutorial, Slides
July 21 Introduction to Galaxy North America Cornell University, Ithaca, New York, United States
Training offered by GTN Member
Dave Clements
Slides
July 19-20 Introduction to Galaxy North America University of Rochester, Rochester, New York, United States
Training offered by GTN Member
Dave Clements
Slides
July 19 Jetstream - performance, early experience, and early results North America XSEDE16, Miami, Florida, United States James Taylor
July 19 CloudBridge: a Simple Cross-Cloud Python Library North America XSEDE16, Miami, Florida, United States Enis Afgan
July 15 Introduction to Galaxy Workshop
This workshop is full
Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
July 13-17 An Introduction to Using Galaxy for Genetic Data Analysis North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States Dave Clements Slides, Tutorial
July 8-12 ISMB 2016 North America Orlando, Florida, United States See presenters Slides, Posters, Video
July 8-9 BOSC 2016 North America ISMB 2016, Orlando, Florida, United States See presenters Slides, Posters, Video
July 4-8 An introduction to Galaxy with the NeCTAR Genomics Virtual Laboratory Workshop Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Igor Makunin, Derek Benson Slides
July 6-7 BOSC Codefest 2016 North America Orlando, Florida, United States Brad Chapman
July 3-7 Poster: Detection of ultra-rare mitochondrial variants Australia SMBE 2016, Gold Coast, Queensland, Australia Anton Nekrutenko
June 30 - July 1 GMOD Meeting North America Indiana University, Bloomington, Indiana, United States Scott Cain Slides
June 25-29 2016 Galaxy Community Conference (GCC2016) North America Indiana University, Bloomington, Indiana, United States
Training offered by GTN Member
Organizers
June 20 Introduction to Galaxy Workshop Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
June 13-17 Using Galaxy for Analysis of RNA-Seq and ChIP-Seq Data North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program
June 16 Galaxy in Production at the University of Minnesota Around the World GalaxyAdmins Web Meetup, Online Evan Bollig, JJ Johnson, Eric Rasche, Hans-Rudolf Hotz, Dave Clements Slides
June 15 BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ Around the World ELIXIR Webinar, Online Olivier Sallou, Anthony Bretaudeau
June 14 RNA-Seq Differential Gene Expression Analysis using the GVL and Galaxy Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 9-10 Informatics on High-throughput Sequencing Data North America Montreal, Quebec, Canada
Training offered by GTN Member
Francis Ouellette
June 5-9 64th ASMS Conference on Mass Spectrometry and Allied Topics North America San Antonio, Texas, United States
Training offered by GTN Member
Presenters
June 8 Variant Calling with Galaxy and the GVL for beginners Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 7 Introduction to the GVL and Galaxy Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 6 Introduction to cloud computing (and its application in bioinformatics) Europe Zagreb, Croatia Enis Afgan
May 31 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 30 Initiation à l’utilisation de Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 27 Variant Detection using Galaxy Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ
May 26 RNA-Seq Analysis Using Galaxy Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ
May 23-24 Analyse statistique de données RNA-Seq sous Galaxy -Recherche des régions d'intérêt différentiellement exprimées Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 19-20 Galaxy : RNAseq alignment and transcripts assemblies Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Celine Noirot, Cédric Cabau
May 18-20 ELIXIR Technical Hackathon: Tools, Workflows and Workbenches
Full
Europe Institut Pasteur, Paris, France Organisers
May 17 Galaxy First Step Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Sarah Maman
May 18-19 Galaxy: Reads alignment and SNP calling Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Philippe Bardou
May 10-14 EDGY—Export of data from Galaxy to Yabi, automated workflow transfer to command line tools North America The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States David Molik
May 12-13 RNA-Seq and DNA-Seq Cancer Analyses Europe Rotterdam, The Netherlands
Training offered by GTN Member
Youri Hoogstrate
May 11-13 NGS & Cancer : Analyses RNA-Seq Europe Paris, France Cancéropôle Île-de-France
May 6 Variant detection using Galaxy Workshop Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training
May 5 De novo genome assembly using Genomics Virtual Lab Workshop Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training, Xin-Yi Chua, Mike Thang
April 28 Galaxy Workshop Tokyo 2016 Asia RCAST, The University of Tokyo, Japan Tazro Ohta, James Taylor Video (Japanese)
April 26 NGS Bioinformatics Data Analysis Workshop Europe NGS 2016 Glasgow, Glasgow, United Kingdom Julian Augley, Graham Hamilton, David Meltzer, Mani Mudaliar
April 22-26 Workshop on Galaxy: Practical Course North America SolBio International Conference 2016, Riviera Maya, México Oswaldo Trelles
April 21 The Galaxy Portal: Accessing Galaxy from Mobile Devices and Tool Development Developments Around the World GalaxyAdmins Web Meetup, Online Ivar Grytten, Geir Kjetil Sandve, John Chilton, Hans-Rudolf Hotz
April 20 NeLS hands-on workshop Europe University of Oslo, Oslo, Norway Ståle Nygård
April 20 Galaxy Update North America BUG, Oregon State University, Corvallis, Oregon, United States Dave Clements
April 19 Utilisation de base du cloud IFB Europe IFB, Gif-sur-Yvette, France IFB
April 6-7 Galaxy DevOps Workshop - Galaxy and Galaxy tools deployment strategies Europe Galaxy DevOps Workshop 2016, Heidelberg, Germany
Training offered by GTN Member
Björn Grüning
April 6 Approaches for the Integration of Visual and Computational Analysis of Biomedical Data North America BioIT World 2016, Boston, Massachusetts, United States Nils Gehlenborg
April 4 IUC Hackathon - Conda dependencies Around the World Online Björn Grüning, Rémi Marenco, Nitesh Turaga
March 29 Introduction à l'analyse de données RNAseq sous Galaxy
Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Yvan Le Bras
March 17 Traitement bioinformatique des données RNA-Seq sous Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 16 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
Full
Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 15 Initiation à l’utilisation de Galaxy
Full
Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 7-10 Training and knowledge-exchange for ELIXIR Galaxy service providers Europe ELIXIR All Hands 2016, Barcelona, Spain Frederik Coppens, Celia van Gelder, Pedro Fernandes Minutes, Action Items, Slides
March 7-8 IUC Contribution Fest - RADSeq Tools and Workflows Around the World Online /src/iuc/index.md Writeup, Slides
February 29 - March 3 Formation Cloud et Galaxy IFB pour France Génomique Europe Campus CNRS de Gif-sur-Yvette, France
Training offered by GTN Member
IFB
Slides
February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics North America ABRF 2016, Fort Lauderdale, Florida, United States
Training offered by GTN Member
Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo
February 15-19 Analyse bioinformatique de séquences sous Galaxy Europe Montpellier SupAgro, Montpellier, France
Training offered by GTN Member
Yolande Olivier, Dominique Alhinc
February 14-19 Using Galaxy workflows for metabolomics (workflow4metabolomics.org) Europe EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists, EMBL-EBI, Hinxton, United Kingdom Etienne Thévenot
February 18 GalaxyAdmins Web Meetup Around the World Online Marius van den Beek, Nate Coraor,Hans-Rudolf Hotz, Dave Clements
February 16 Initiation à la plateforme web GALAXY Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Yvan Le Bras
February 11 BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo) North America AGBT, Orlando, Florida, United States Anushka Brownley
February 8-9 Initiation à l’environnement UNIX et à la plateforme GALAXY Europe Montpellier OMICS Days 2016, Montpellier, France
Training offered by GTN Member
Yvan Le Bras
January 21, 22 Introduction to Galaxy Workshop North America Icahn School of Medicine at Mt. Sinai, New York, New York, United States
Training offered by GTN Member
Dave Clements, Andrew Sharp
Slides
January 21 RNA-Seq analysis using Galaxy Workshop Australia QFAB, Brisbane, Queensland, Australia Melinda Beawer
January 19 An introduction to clinical bioinformatics Europe Festival of Genomics London, London, United Kingdom Ang Davies
January 19 NGS Data Analysis in Galaxy (CTMM-TraIT course) Europe VU University Medical Center Amsterdam, The Netherlands Christian Rausch, Youri Hoogstrate, Rita Azevedo
January 8, 15 Introduction to NGS data analysis Europe VIB, Leuven, Belgium Janick Mathys
January 9-13 Plant and Animal Genome (PAG XXIV) North America San Diego, California, United States
Training offered by GTN Member
See presenters
January 8 Introduction to Galaxy Workshop North America Arizona State University, Tempe, Arizona, United States
Training offered by GTN Member
Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko
Designates a training event offered by GTN Member Designates a training event offered by GTN member(s)
## 2015
Galaxy @ Plant and Animal Genome (PAG 2015) Revolutionizing Next-Generation Sequencing: Tools and Technologies   January 22 Galaxy Baltimore Meetup   Analyse bioinformatique de séquences sous Galaxy   19 February GalaxyAdmins Web Meetup   February 18 Galaxy Baltimore Meetup   Democratizing the ability to analyze genomic data Variant Detection Using Galaxy Ruđer Bošković Institute (RBI) Développement et intégration d’applications sous Galaxy Galaxy Meetups @ Penn State   Workshop: Variant detection using Galaxy Fourth GUGGO meeting   RNA-Seq and ChIP-Seq Analysis with Galaxy   16 April GalaxyAdmins Web Meetup   Initiation à la plateforme web GALAXY   QFAB Workshops Bio-IT World 2015 Galaxy Workshop Tokyo 2015 High-throughput Biology: From Sequence to Networks 2015 QFAB Workshop: Variant detection using Galaxy Getting Bioinformatics Done with Galaxy   Galaxy Meetups @ Penn State   MIPRO 2015   Penn State University College of Medicine 63rd ASMS Conference on Mass Spectrometry and Allied Topics Cycle Workshop: RNA-Seq analysis using Galaxy   18 June GalaxyAdmins Web Meetup   Short Course in Medical Genetics and Genetic Pathology 2015 Initiation à la plateforme web GALAXY      2015 Galaxy Community Conference (GCC2015)    BOSC 2015  ISMB ECCB 2015 20 August GalaxyAdmins Web Meetup   Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow @ IEEE eScience 2015   RNA-seq data analysis NGS Course Initiation à la plateforme web GALAXY   Using Galaxy for Analysis of High Throughput Sequence Data   Western Association of Core Directors (WACD) Annual Meeting Traitement des données métabolomiques sous Galaxy   TRAPLINE: An Integrated Galaxy Pipeline for RNAseq Data Processing, Evaluation and Prediction Next generation sequencing (NGS) data analysis Analyse avancée de séquences October Galaxy Admins Meetup Workshop: Extended RNA-Seq analysis 6 Galaxy related posters @ Genome Informatics 2015   3 Workshop: Galaxy for the Analysis of Very Large Biomedical Data; Common Workflow Language on Galaxy, Part of Portable Bioinformatics; Single-Cell Sequencing: Analysis & Visualization of Copy Number Variations    Advanced Variant Calling with Galaxy Analyse de données RNA-seq sous l’environnement Galaxy Galaxy Day 2015 Advanced RNA-Seq DGE with Galaxy Galaxy Training from Bioplatforms Australia and Intersect Galaxy Session at III Bioinformatics and Computational Biology Symposium 
Date Topic/Event Venue/Location Contact Links
December 18 Galaxy Session Europe III Bioinformatics and Computational Biology Symposium, Barcelona, Spain Email
December 3 RNA-Seq Analysis Using Galaxy Australia University of Newcastle, Newcastle, NSW, Australia
Training offered by GTN Member
Mark Crowe, Katherine Champ
December 4 Variant Detection Using Galaxy
November 30 - December 1 IUC Contribution Fest - Metagenomics Tools and Workflows Around the World Online /src/iuc/index.md, John Chilton
November 25 Adapting Galaxy bioinformatics to outbreak-associated Clostridium difficile Biomedical Discovery and Commercialization Symposium 2015 Zachary Lin Abstract
November 25 Advanced RNA-Seq DGE with Galaxy Australia VLSCI, Carlton, VIC, Australia
Training offered by GTN Member
VLSCI
November 18 Hackathon Galaxy 2015 Europe Institut Pasteur, Paris, France Email
November 19 Galaxy Day 2015 Presentations
November 17-18 Analyse de données RNA-seq sous l’environnement Galaxy Europe PRABI, Lyon, France
Training offered by GTN Member
Email
November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy Europe PRABI, Lyon, France
Training offered by GTN Member
Email
November 12-13 Engaging Biologists with Big Data Using Interactive Genome Annotation BD2K All-Hands Grantee Meeting, Bethesda, Maryland, United States Jeremy Goecks Poster
November 12 BioTeam & UC Davis Webinar: Introduction to Genomics Data Analysis with Galaxy Around the World Webinar - Open to all Email
November 5 RNA-Seq Differential Gene Expression Analysis using Galaxy Australia VLSCI, Carlton, VIC, Australia
Training offered by GTN Member
VLSCI
Advanced Variant Calling with Galaxy
Training offered by GTN Member
VLSCI
November 3 Galaxy for the Analysis of Very Large Biomedical Data Workshop North America Festival of Genomics California, San Mateo, California, United States
Training offered by GTN Member
Dan Blankenberg, John Chilton
Common Workflow Language on Galaxy John Chilton
Single-Cell Sequencing: Analysis & Visualization of Copy Number Variations Workshop Robert Aboukhalil, Tyler Garvin
October 28 - November 3 Computational & Comparative Genomics Course North America Cold Spring Harbor Laboratory, New York, United States
Training offered by GTN Member
James Taylor
October 28-31 Hidden RNA codes revealed from the plant in vivo RNA structurome North America Genome Informatics 2015, Cold Spring Harbor Laboratory, New York, United States Yin Tang
Poster 55: From the ground to the cloud in just minutes—Building a customized Galaxy analysis server using only a web browser Dan Blankenberg
Poster 59: Galaxy Tool World Progression—Happier developers, happier users Martin Cech Poster
Poster 63: Building more expressive Galaxy workflows John Chilton
Poster 113: Large scale correlation of epigenomics data Pierre-Étienne Jacques
Poster 151: Automated transfer of workflows from Galaxy to Yabi and command line tools David Molik Poster
Poster 179: The Galaxy HiC browser—An interactive multi-dimensional genome topology browser and data repository Mike Sauria
Poster 195: Galaxy Methylation Toolkit as a Galaxy flavor Nitesh Turaga Poster
October 29 Introduction to Proteomics with Galaxy Australia VLSCI, Carlton, VIC, Australia
Training offered by GTN Member
VLSCI
October 28-29 Workshop: Extended RNA-Seq analysis Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe
October 20 Variant calling with Galaxy (beginners) Australia VLSCI, Carlton, VIC, Australia
Training offered by GTN Member
VLSCI
October 15 October Galaxy Admins Meetup Around the World Online David Kovalic, Hans-Rudolf Hotz, Dave Clements Video, Slides
October 14 Using GenAP and Galaxy for Genomics analysis North America Sherbrooke, Québec, Canada Frédéric Robidoux
October 12-14 Analyse avancée de séquences Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France Email
October 10-11 The Microbial Genomics Virtual Laboratory Australia ABACBS 2015 Conference, Sydney, NSW, Australia Simon Gladman
October 9 Introduction to Integrative Analysis with GenomeSpace Workshop North America ASHG 2015, Baltimore, Maryland, United States GenomeSpace
October 8 Introduction to Galaxy Australia VLSCI, Carlton, VIC, Australia
Training offered by GTN Member
VLSCI
October 1 Proteogenomics and Metaproteomics using the GalaxyP Platform Asia CSIR-Institute of Genomics & Integrative Biology (IGIB), New Dehli, India Pratik Jagtap
September 30 Proteogenomics and Metaproteomics using the GalaxyP Platform Asia Jawaharlal Nehru University, New Dehli, India Pratik Jagtap
September 27-30 TRAPLINE: An Integrated Galaxy Pipeline for RNAseq Data Processing, Evaluation and Prediction Europe German Conference on Bioinformatics (GCB), Dortmund, Germany Markus Wolfien, also see TRAPLINE Manual
September 28-30 Next generation sequencing (NGS) data analysis Europe University Medical Centre Groningen, The Netherlands
Training offered by GTN Member
BioSB Education
September 28 Mutational Analysis with Random DNA Identifiers (MARDI), a High-Fidelity NGS Approach That Simultaneously Identifies Gene Marker Mutations from Heterogeneous Mutant Cell Populations North America Environmental Mutagenesis and Genomics Society (EMGS), New Orleans, Louisiana, United States Javier Revollo
September 21-25 Traitement des données métabolomiques sous Galaxy Europe Station Biologique de Roscoff, France
Training offered by GTN Member
W4M Course Organisers
September 24 Proteogenomics and Metaproteomics using the GalaxyP Platform Asia IICT-CSIR, Hyderabad, India Pratik Jagtap
September 23 Proteogenomics and Metaproteomics using the GalaxyP Platform Asia CSIR-CCMB, Hyderabad, India Pratik Jagtap
September 21-23 JHU-DaSH: Data Science Hackathon North America Baltimore, Maryland, United States Email
September 21 Proteogenomics and Metaproteomics using the GalaxyP Platform Asia IIT Bombay, Bombay, India Pratik Jagtap
September 17-18 Remote Hackathon for Tools and Dataset Collections Around the World Online IUC
September 17-18 Utilizing the Galaxy Analysis Framework at Core Facilities North America Western Association of Core Directors (WACD) Annual Meeting, Portland, Oregon, United States Dave Clements Slides, Slides with notes
September 14-18 Using Galaxy for Analysis of High Throughput Sequence Data North America UC Davis Bioinformatics Core, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics
September 15 Towards accessible, reproducible, and transparent research in the life sciences: an innovative open source VRE approach in Western France North America HUBbub 2015, Indianapolis, Indiana, United States Yvan Le Bras
September 9 Initiation à la plateforme web GALAXY Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Cyril Monjeaud, Yvan Le Bras
September 7-9 RNA-seq data analysis NGS Course Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
BioSB Education
September 2 Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow Europe IEEE eScience 2015, Munich, Germany Nicholas Hazekamp Paper
August 20 Genomic data management at Canada's National Microbiology Laboratory with IRIDA and Galaxy Around the World August 2015 GalaxyAdmins Web Meetup, Online Hans-Rudolf Hotz, Aaron Petkau Slides, Video
August 10 Big Data Services: Globus Online, Galaxy, GridFTP North America Joint Statistical Meetings (JSM2015), Seattle, Washington, United States Ravi Madduri
July 23 Pitagora-Galaxy Meetup Asia National Institute of Informatics, Tokyo, Japan Ryota Yamanaka, et al. Summary
July 10-14 BOSC 2015 & ISMB/ECCB 2015
10+ Galaxy related talks, posters, panel discussions, ...
Europe Dublin, Ireland See presenters Slides
July 6-10 An Introduction to Galaxy with the Genomics Virtual Lab: workshop AustraliaWinter School in Mathematical and Computational Biology, University of Queensland, Brisbane, Queensland, Australia
Training offered by GTN Member
Mark Crowe
July 6-9 Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics EuropeJOBIM 2015, Clermont-Ferrand, France Mélanie Pétéra
FROGS: Find Rapidly OTU with Galaxy Solution Lucas AUER
Eoulsan 2: Facilitating expansion to new NGS tools and execution platforms Sandrine PERRIN
Poster-026 (#120) Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques Jonathan LORENZO Poster
Poster-027 (#122): !RiboTools: A Galaxy toolbox for qualitative Ribosome Profiling analysis Rachel LEGENDRE Poster
Poster-063 (#99) Decoupling RNAseq data from genomic context to help understanding the data Bernd JAGLA
Poster-083 (#97) FROGS: Find Rapidly OTU with Galaxy Solution Lucas AUER
Poster-097 (#24) Integration of RSAT tools in Galaxy with SOAP web services Jocelyn BRAYET Poster
Poster-102 (#41): Workflows for comparative protein analysis using PipeAlign in Galaxy Arnaud KRESS Poster
Poster-117 (#156) Le Cloud Académique IFB pour les Sciences du Vivant Christophe BLANCHET
Poster-142 (#169): A French Galaxy Tool Shed to federate the national infrastructures and offering quality assessed tools Loraine Brillet-Guéguen
July 4-8 2015 Galaxy Community Conference (GCC2015) Europe The Sainsbury Lab, Norwich, United Kingdom GCC2015 Organisers
July 4-5 Data Hackathon Organisers
Coding Hackathon Organisers
July 5
Training offered by GTN Member
GCC2015 Organisers
July 6
July 6-8 GCC2015 Organisers
June 25 Initiation à l'analyse de données de type RAD par le pipeline STACKS sous Galaxy
Lille, France
Training offered by GTN Member
Yvan Le Bras, Anthony Bretaudeau, Cyril Monjeaud
June 22 Massively parallel sequence data analysis workshop (introduction to Galaxy framework for variant calling) Australia Part of Short Course in Medical Genetics and Genetic Pathology 2015, Sydney, Australia
Training offered by GTN Member
Ross Lazarus, Andrew Lonie
June 22 Initiation à la plateforme web GALAXY
Galaxy User Group Grand Ouest (GUGGO), Angers, France
Training offered by GTN Member
Yvan Le Bras, Cyril Monjeaud
June 22 Introduction à l'analyse de données RNAseq sous Galaxy
Galaxy User Group Grand Ouest (GUGGO), Angers, France
Training offered by GTN Member
Yvan Le Bras, Cyril Monjeaud
June 18 GenAP: Computing platform for life sciences research North America HPCS 2015, Montreal, Quebec, Canada Pierre-Etienne Jacques, Carol Gauthier
June 18 Galactic Engineering: Experiences deploying Galaxy and developing tools within the Bioinformatics Core Facility at the University of Manchester Around the World June 2015 GalaxyAdmins Web Meetup, Online Peter Briggs, John Chilton, Hans-Rudolf Hotz Slides
June 16 Australian Galaxy Developers Workshop University of Melbourne, Melbourne, Australia Simon Gladman, Clare Sloggett, Nuwan Goonasekera Links
June 11-12 Introduction to Galaxy: RNA-seq and ChIP-seq data analysis Workshop Europe University of Cambridge, Cambridge, United Kingdom
Training offered by GTN Member
Dave Clements
Slides
June 10-11 Informatics on High-throughput Sequencing Data North America Toronto, Ontario, Canada
Training offered by GTN Member
Francis Ouellette
Slides, Video
June 8-9 Introduction to Galaxy Workshop
Workshop is full, but there is a waiting list
Europe University of Glasgow, Glasgow, United Kingdom
Training offered by GTN Member
Dave Clements
Slides
June 6-9 WS02: NGS Variant Analysis with Galaxy Europe ESHG 2015, Glasgow, United Kingdom
Training offered by GTN Member
Dave Clements
Slides
June 4 Analysis Reproducibility North America Reproducibility of Data Collection and Analysis: Modern Technologies in Genome Technology: Potentials and Pitfalls, NIH, Bethesda, Maryland, United States James Taylor Slides, Video (Chapter 8)
May 31 - June 4 63rd ASMS Conference on Mass Spectrometry and Allied Topics North America St. Louis, Missouri, United States Speaker List
June 2 Initiation à l’utilisation de Galaxy Europe Jouy-en-Josas, France Veronique Martin, Sophie Schbath
June 3 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
June 4 Traitement bioinformatique des données RNA-Seq sous Galaxy
June 3 Workshop: RNA-Seq analysis using Galaxy Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe
May 25-29 Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research Europe MIPRO, Opatija, Croatia Lucas Forer
Building and provisioning computational cluster environments on academic and commercial clouds Enis Afgan Paper
May 22, 29 Introduction to the analysis of NGS data
Registration is closed
Europe Leuven, Belgium Janick Mathys
May 26-28 Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis in Plants
Registration is closed
Europe České Budějovice, Czech Republic Jiri Macas
May 27 Introduction to Galaxy for Next Generation Sequencing Analysis North America Penn State College of Medicine, Hershey, Pennsylvania, United States
Training offered by GTN Member
Anton Nekrutenko, Jill Curry
May 22 Using GenAP and Galaxy for Genomics analysis North America Sherbrooke, Québec, Canada Frédéric Robidoux
May 15 RNA-Seq Galaxy Workshop North America Penn State University, State College, Pennsylvania, United States
Training offered by GTN Member
Martin Cech, Anton Nekrutenko
Slides
May 13 Workshop: Variant detection using Galaxy Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe
May 13 Getting Bioinformatics Done with Galaxy North America BGI @ UC Davis workshop series, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics
May 12 Initiation à l’utilisation de Galaxy Europe Jouy-en-Josas, France Veronique Martin, Sophie Schbath
May 13 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
May 7 Intégration d’outils dans la plateforme web Galaxy
Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Cyril Monjeaud, Yvan Le Bras
April 27 - May 3 High-throughput Biology: From Sequence to Networks 2015 North America New York City, New York, United States
Training offered by GTN Member
Francis Ouellette
Slides, Video
April 28 Galaxy Workshop Tokyo 2015 Asia RCAST, The University of Tokyo, Japan Ryota Yamanaka Slides
April 28 http://biosb.nl/events/eps-postgraduate-course-genome-assembly-2nd-edition/Genome Assembly, EPS Postgraduate course Europe Wageningen University, The Netherlands BioSB Education
April 21 Workshop: Large Scale NGS Analysis Using Globus Genomics North America Bio-IT World 2015, Boston, Massachusetts, United States Paul Davé, Ravi Madduri, Alex Rodriguez, Dinanath Sulakhe
April 22 Large-Scale NGS Analysis Using Globus Genomics: Challenges and User Success Stories Ravi Madduri
Extending Galaxy with External Microbiome Databases Bob Brown
April 23 Visualization Tools for the Refinery Platform Nils Gehlenborg Slides
April 18-21 Towards a Cloud-ready Cancer Genomics Analysis Pipeline North America Canadian Human and Statistical Genetics Meeting, Vancouver, British Columbia, Canada Bruno Grande
April 20-21 Workshop: Extended RNA-Seq analysis QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe
April 17-18 Building data analysis ecosystem in life sciences with Galaxy The 3rd Annual LA Conference on Computational Biology & Bioinformatics, Louisiana State University, Baton Rouge, Louisiana, United States Anton Nekrutenko Slides
April 16 GalaxyAdmins April 2015 Meetup Online Hans-Rudolf Hotz, Dave Clements, Carrie Ganote, Aysam Guerler Slides, video
April 14-15 Swift Parallel Scripting for Science, Engineering and Data Analysis GlobusWorld 2015, Chicago, Illinois, United States Mike Wilde
April 8 Initiation à la plateforme web GALAXY Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Cyril Monjeaud, Yvan Le Bras
April 7 5th GUGGO meeting Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Cyril Monjeaud, Yvan Le Bras
April Optimization of a Galaxy pipeline in the Magerit supercomputer for analysis of the sugarcane microbiome CBGP (Centre for Plant Biotechnology and Genomics), Madrid, Spain Loïc Bourgeois Slides
April 1 Workshop: NGS Analysis and Workflows using Galaxy Stanford Center for Genomics & Personalized Medicine, Stanford University, Palo Alto, CA, United States
Training offered by GTN Member
Ramesh V Nair, Somalee Datta, Jennifer Jackson, Anushka Brownley
March 28-31 The Galaxy Framework as a Bioinformatics Solution for Proteomics and Multi-omics Studies MS2: Integrative Technologies for Advancing Scientific Cores, ABRF 2015, St. Louis, Missouri, United States Pratik Jagtap Slides
Use of Genomics Visualization Methods within Galaxy Platform Aysam Guerler slides
Globus Galaxies: Experiences in building sustainable services for Science Ravi Madduri Slides
March 23-26 RNA-Seq and ChIP-Seq Analysis with Galaxy UC Davis Bioinformatics Core, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics
March 24 Single cell sequencing and functional genomics data with Galaxy, UCSC Xena and Gingko VIZBI 2015, Cambridge, Massachusetts, United States Robert Aboukhalil, Mary Goldman
March 24 Live on-line tutorial: Visualization of whole genome DNA methylation data in IGB Online Nowlan Freese, Ann Loraine
March 23 Workshop: Variant detection using Galaxy Harry Perkins Institute of Medical Research, Nedlands, Western Australia
Training offered by GTN Member
Mark Crowe
March 24-25 Workshop: Extended RNA-Seq analysis
March 23 The Galaxy Project Global Invertebrate Genomics Alliance (GIGA) II Workshop, Münich, Germany James Taylor Slides
March 17 Using Galaxy Workshop Penn State University, State College, Pennsylvania, United States
Training offered by GTN Member
Martin Cech, Anton Nekrutenko
March 3-5 COST Basic training on NGS data analysis Course University of Latvia, Riga Latvian Genome Centre
March 3-5 Développement et intégration d’applications sous Galaxy La Chapelle Sur Erdre, France
Training offered by GTN Member
Frederique Malipier
March 2-3 Workshop on Bioinformatics Methods in Genomics RBI, Zagreb, Croatia
Training offered by GTN Member
Enis Afgan
March 2 RNA-Seq analysis using Galaxy QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe
February 27 Introduction to Galaxy Workshop Northwestern University, Chicago, Illinois, United States
Training offered by GTN Member
Dave Clements, Matt Schipma
Slides
February 27 How to expand the Galaxy from genes to Earth in six simple steps Computation Institute, Chicago, Illinois, United States Raffaele Montella Slides
February 27 Variant Detection Using Galaxy University of Sydney, Sydney, Australia
Training offered by GTN Member
Mark Crowe, Katherine Champ
February 23-27 Bioinformatics Galaxy Course University of Frieburg, Frieburg, Germany
Training offered by GTN Member
Björn Grüning
February 26 Democratizing the ability to analyze genomic data Medical University of Innsbruck, Innsbruck, Austria Enis Afgan
February 24 Intégration d’outils dans la plateforme web Galaxy Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Cyril Monjeaud, Yvan Le Bras
February 16-20 Accessible and Reproducible Large-Scale Analysis with Galaxy Genome and Transcriptome Analysis, part of Molecular Medicine Tri-Conference, San Francisco, California, United States James Taylor Slides
Large-Scale NGS data Analysis on Amazon Web Services Using Globus Genomic Genomics & Sequencing Data Integration, Analysis and Visualization, part of Molecular Medicine Tri-Conference, San Francisco, California, United States Ravi Madduri
iReport: An Integrative “omics” Reporting and Visualisation Platform Andrew Stubbs
February 19 February 2015 GalaxyAdmins Web Meetup Online Hans-Rudolf Hotz, Dave Clements Slides, Video
February 18 Baltimore Area Galaxy Meetup Baltimore, Maryland, United States Enis Afgan, Nitesh Turaga Slides
February 15 Australian Galaxy Developers Workshop University of Sydney, Sydney, Australia Simon Gladman, Nuwan Goonasekera
February 9-13 Analyse bioinformatique de séquences sous Galaxy Montpellier, France
Training offered by GTN Member
J.F. Dufayard
February 6 Introduction à l'analyse de données RNAseq sous Galaxy Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Yvan Le Bras
January 28 ChIP-Seq Analysis and Visualization using Galaxy and IGB Tutorial Online Nowlan Freese
January 22 Baltimore Area Galaxy Meetup
This meetup is now full.
Baltimore, Maryland, United States Enis Afgan, Nitesh Turaga Slides
January 19-20 NGS pipelines with Galaxy e-Infrastructures for Massively Parallel Sequencing, SciLifeLab, Uppsala, Sweden Luca Pireddu
January 15-16 Accessible and Reproducible Genomics at Scale with Galaxy Revolutionizing Next-Generation Sequencing: Tools and Technologies, Leuven, Belgium James Taylor
January 10-14 Galaxy for SNP and Variant Data Analysis Plant and Animal Genome XXIII (PAG2015), San Diego, California, United States Dave Clements Slides
Designates a training event offered by GTN Member Designates a training event offered by GTN member(s)

2014

Galaxy @ Plant and Animal Genome (PAG 2014) 2014 GMOD Meeting   Mosquito Informatics  Analyse Bioinformatique de séquences pour l'amélioration des plantes RNA-Seq & ChIP-Seq analysis course using Galaxy Introduction to NGS Bioinformatics   GMOD Malaysia 2014  CTMM TraIT Hackathon Register now for Galaxy Australasia Workshop (GAW 2014)   GlobusWorld 2014   Bio-IT World 2014     GMOD Online Training   MIPRO 2014   Informatics on High Throughput Sequencing Data Workshop  62nd ASMS Conference on Mass Spectrometry and Allied Topics Using Galaxy for Analysis of High Throughput Sequence Data @ UC Davis Bioinformatics Core   Analisi dati Next Generation Sequencing in Galaxy   ABiMS GCC2014 Hackathon  GCC2014 Training Day  GCC2014, June 30-July2  BOSC 2014    ISMB 2014   QFAB Workshops DNA Sequence Bioinformatics Analysis with the Galaxy Platform Galaxy at ECCB Fourth GUGGO meeting   Australian Bioinformatics Network   Analisi dati Next Generation Sequencing in Galaxy   CIR Interactive Workshop - Introduction to bioinformatics analysis with Galaxy application   2014 Swiss German Galaxy Tour iReport - A tool to create flexible, scalable Galaxy tool interface, presented at the DTL Programmers Meeting Des bonnes pratiques d'intégration d'outils sous Galaxy   Galaxy Training Days   Deciphering Big Data Stacks: An Overview of Big Data Tools, Workshop on Big Data Analytics: Challenges, and Opportunities (BDAC-14)]], Supercomputing 2014 Analisi dati Next Generation Sequencing in Galaxy   Workshop: Extended RNA-Seq analysis Galaxy Cluster to Cloud - Genomics at Scale, at GCE: The 9th Gateway Computing Environments Workshop, part of Supercomputing 2014 (SC14) RNA-Seq & ChIP-Seq analysis course using Galaxy  Galaxy Day  Intro to Galaxy Workshop at Virginia State University RNA-Seq and ChIP-Seq Analysis with Galaxy, UC Davis Bioinformatics Core
Date Topic/Event Venue/Location Links Contact
December 19 BioMaS: a friendly web service for improved taxonomic assessment of microbiomes Europe BiP-Day 2014: Seconda Giornata della Bioinformatica Pugliese, Bari, Italy B Fosso Abstract
Science applications in the Bc2S farm G Donvito Abstract
December 16-19 RNA-Seq and ChIP-Seq Analysis with Galaxy North America UC Davis, California, United States Complete Workshop UC Davis Bioinformatics Training
December 12 Introduction to Galaxy Workshop North America Virginia State University, Petersburg, Virginia, United States Slides Glenn Harris, Dave Clements
December 9-11 Microarray data analysis on Galaxy Europe BIRD IFB core facility Nantes University/INSERM, Nantes, France Raluca Teusan, Audrey Bihouée, Edouard Hirchaud
December 8-9 Implementing qDNAseq in Galaxy: a whole genome sequencing copy number analysis tool Europe Benelux Bioinformatics Conference (BBC 2014) Poster Stef van Lieshout
iFUSE2 with iREPORT: Integrative Tumour Analysis and Reporting in Galaxy Saskia Hiltemann
December 5-8 Next Generation Data Analysis Workshop North America UC Riverside, Riverside, California, United States Complete Workshop; Galaxy slides, exercises, manual Rakesh Kaundal
December 3 Using GenAP and Galaxy for Genomics analysis North America Sherbrooke, Québec, Canada Sharen Roland Materials
December 3 Galaxy Day Europe Institut Curie, Paris, France IFB Galaxy
November 26-28 Alveo, a Human Communication Science Virtual Laboratory Australia Australasian Language Technology Workshop 2014, Melbourne, Victoria, Australia Paper Dominique Estival
November 26-28 RNA-Seq & ChIP-Seq analysis course using Galaxy PRABI, Lyon, France Navratil V., Oger C., Veber P., Deschamps C., Perriere G.
November 21 Galaxy Cluster to Cloud - Genomics at Scale GCE: The 9th Gateway Computing Environments Workshop, Supercomputing 2014 (SC14), New Orleans, Louisiana, United States Paper Enis Afgan
FACE-IT: A Science Gateway for Food Security Research Paper Raffaele Montella
Cloud-based Image Analysis Gateway for Traumatic Brain Injury Research Paper, Slides Kyle Chard
PDACS: a portal for data analysis services for cosmological simulations Paper, Slides Saba Sehrish
November 19-20 Workshop: Extended RNA-Seq analysis The University of Queensland, Brisbane, Queensland, Australia Mark Crowe
November 19 Lifeportal - easy, flexible and powerful service for life scientists University of Oslo, Oslo, Norway Slides Katerina Michalickova, Nikolay Vazov, Thomas Röblitz
November 18-20 Analisi dati Next Generation Sequencing con Galaxy Cagliari, Italy CRS4
November 19 Merging and sharing Metabolomics analysis tools in Galaxy MERLION Metabolomics Workshop, Singapore Slides Robert Davidson
November 16 Deciphering Big Data Stacks: An Overview of Big Data Tools Workshop on Big Data Analytics: Challenges, and Opportunities (BDAC-14), Supercomputing 2014 (SC14), New Orleans, Louisiana, United States Enis Afgan
November 12 RNA-Seq Alignment and Visualization using Galaxy and IGB Online Video Nowlan Freese
November 5-8 Rapidly bringing software to biologists with Galaxy and Docker Biological Data Science, Cold Spring Harbor Laboratory, New York, United States Slides, PDF John Chilton
Adventures in scaling Galaxy Slides, PDF James Taylor
P22: PIPE-CLIP: A comprehensive online tool for CLIP-seq data analysis
(See PIPE-CLIP)
Beibei Chen
P82: Building Galaxy Japan community Poster Ryota Yamanaka
November 6 IFB Cloud computing training for Biology with Galaxy sessions Galaxy User Group Grand Ouest, Rennes, France Olivier Sallou, Marie Grosjean, Charles Loomis, Yvan Le Bras, Cyril Monjeaud, Olivier Collin, Christophe Blanchet, Jean-François Gibrat
November 3-6 Galaxy training days
Workshop full, but you can get on the waiting list
INRA de Toulouse Midi-Pyrénées, France Slides GenoToul Bioinformatics Team
November 3-5 Des bonnes pratiques d'intégration d'outils sous Galaxy
Workshop full, but you can get on the waiting list
Station Biologique de Roscoff, France Christophe Caron
November 3-5 Galaxy NGS Training in the Group of Prof. Dr. Bettina Kempkes
Workshop full, but you can get on the waiting list
Helmholtz Zentrum München, Germany Björn Grüning
November 5 11th Galaxy initiation training session Galaxy User Group Grand Ouest, Rennes, France Yvan Le Bras, Cyril Monjeaud
October 29 - November 4 Computational & Comparative Genomics Course
Application Deadline: July 15
Cold Spring Harbor Laboratories (CSHL), New York, United States William Pearson, Lisa Stubbs
October 30 Open Publishing for the Big Data era UC Davis, Davis, California, United States Slides Scott Edmunds
October 22 Launching and managing own Galaxy cluster on the cloud University of Oslo, Norway Abdulrahman Azab
October 21 Galaxy: Accessible and Reproducible Data Analysis for Bench Scientists Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States Slides Dave Clements
October 18-22 A case study for high throughput analysis of NGS data for translational research using Globus Genomics ASHG 2014, San Diego, California, United States Dina Sulakhe
Pathogenic mutation of coagulation factor X deficiency may prevent atypical hemolytic uremic syndrome F. Bu
Assessing the hidden genome architecture of structural variants with Globus Genomics Galaxy pipelines Alex Rodriguez
October 17 Accessible, Transparent, And Reproducible Genomics With Galaxy IDIES Annual Symposium, Johns Hopkins University, Baltimore, Maryland, United States Slides James Taylor
October 14 Building an open and scalable analysis platform for genomics Best Practices for Big Data in Genomics Workshop, Boston, Massachusetts, United States Video Guillaume Bourque
October 10 iReport - A tool to create flexible, scalable Galaxy tool interface DTL Programmers Meeting, SURF Foundation, Utrecht, The Netherlands Saskia Hiltemann
How we run Galaxy workflows through the API Freek de Bruijn
October 6 - 24 Intensive course in High Throughput Sequencing technologies and bioinformatics analysis University of Oslo, Oslo, Norway Lex Nederbragt, Karin Lagesen
October 1 Workshop: RNA-Seq analysis using Galaxy The University of Queensland, Brisbane, Queensland, Australia Mark Crowe
September 28 - October 3 Genome-wide TALEN off-target prediction German Conference on Bioinformatics 2014 (GCB 2014), Bielefeld, Germany Jan Grau
BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-Seq profiles Pavankumar Videm
September 30 - October 2 Galaxy Training and Demo Day 2014 Swiss-German Galaxy Tour with events in Bern, Switzerland and Freiburg, Germany Slides Hans-Rudolf Hotz and Bjoern Gruening
(second Swiss) Galaxy Workshop Slides
German Galaxy Developers Day Slides
September 30 CIR Interactive Workshop - Introduction to bioinformatics analysis with Galaxy application RBI, Zagreb, Croatia
This workshop is now full
Enis Afgan
September 23-25 Analisi dati Next Generation Sequencing con Galaxy Cagliari, Italy CRS4
September 25 RADseq analysis using STACKS on Galaxy Galaxy User Group Grand Ouest, Rennes, France Slides, l'exemple de STACKS Yvan Le Bras, Cyril Monjeaud
September 24 Introduction to Galaxy - Data Manipulation and Visualisation University of Cambridge, United Kingdom Course Material Anne Pajon, Jing Su
September 23 Galaxy Workshop including "Using Galaxy: RNA-seq" Stanford University, Palo Alto, CA, US Slides Organizers, Jennifer Hillman-Jackson
September 22-23 Computational Genomics Workshop Broad Institute, Boston, MA, US Broad Institute
September 20-23 A Hadoop‐Galaxy adapter for user‐friendly and scalable data‐intensive bioinformatics in Galaxy ACM BCB 2014, Newport Beaach, California, United States Paper Luca Pireddu
September 19 The Great GigaScience and Galaxy (G3) Workshop The University of Melbourne, Melbourne, Australia Nick Wong
September 15 Fourth GUGGO meeting Galaxy User Group Grand Ouest, Rennes, France Summary Cyril Monjeaud, Yvan Le Bras
September 11 Galaxy: Data intensive biology for everyone Johns Hopkins XSEDE Day, Baltimore, Maryland, United States Slides James Taylor
September 11 Tools integration on Galaxy
This workshop is full
Galaxy User Group Grand Ouest, Rennes, France Summary Cyril Monjeaud, Yvan Le Bras
September 6-10 At least one tutorial, a panel of European Public Galaxy Instances, and 5 posters European Conference on Computational Biology (ECCB'14), Strasbourg, France Presentations Presenters
August 29 Workshop: Variant detection using Galaxy The University of Queensland, Brisbane, Queensland, Australia Mark Crowe
August 25-27 Análise e anotação funcional de seqüências NGS usando Stingray@Galaxy Fiocruz, Rio de Janeiro, Brasil Slides (in Portuguese) Alberto Dávila
August 19-20 Creating and Using Tumor Genome Profiles with Galaxy Next Generation Dx Summit, Washington, DC, United States Slides Jeremy Goecks
August 15 Workshop: An Introduction to De Novo Genome Assembly The University of Queensland, Brisbane, Queensland, Australia Mark Crowe
July 28 - August 1 Workshop: DNA Sequence Bioinformatics Analysis with the Galaxy Platform University of São Paulo (USP), São Paulo, Brazil Slides Dave Clements
July 18 Workshop: RNA-Seq analysis using Galaxy Brisbane, Australia Mark Crowe
July 17-18 The GigaSolution to data publication, reuse and integration 10th International Conference on Data Integration in the Life Sciences (DILS 2014), Instituto Superior Técnico, Lisbon, Portugal Demo Christopher Hunter
July 11-15 ISMB and BOSC 2014
At least six talks and five posters
Boston, Massachusetts, United States |Links See presenter list
July 10 An Introduction to Galaxy with the Genomics Virtual Lab Post-GSA 2014 Workshop, University of Sydney, NSW, Australia Workshop materials Mark Crowe
July 7-9 NBIC/BioSB RNA- seq data analysis course Leiden, the Netherlands NBIC/BioSB
June 28-30 Galaxy Hackathon Homewood Campus of Johns Hopkins University, Baltimore, Maryland, United States Organizers
June 30 -
July 2
2014 Galaxy Community Conference (GCC2014) Slides Organizers
June 23-24 Galaxy : initiation à la phylogénie Formation en Bioinformatique Plateforme ABiMS, Station Biologique de Roscoff, France Christophe Caron
June 18-20 Analisi dati Next Generation Sequencing in Galaxy Presidio Ospedaliero San Giovanni di Dio, Cagliari, Italy CRS4 Segreteria
June 16-20 Using Galaxy for Analysis of High Throughput Sequence Data UC Davis, California, United States Complete Workshop UC Davis Bioinformatics Training
June 19 Utilisation du Cloud pour la Biologie l'Institut Français de Bioinformatique (IFB) à Gif-sur-Yvette, France Christophe Blanchet, Olivier Collin
June 15-19 62nd ASMS Conference on Mass Spectrometry and Allied Topics
Including at least 9 workshops, talks and posters
Baltimore, Maryland, United States See presenter list
June 16 Initiation à l’utilisation de Galaxy Cycle "Bioinformatique par la pratique" 2014, INRA Jouy-en-Josas, France Véronique Martin, Sophie Schbath
June 17 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
June 11-12 Galaxy RNAseq de novo/avec référence & cleaning Formation en Bioinformatique Plateforme ABiMS, Station Biologique de Roscoff, France
June 10 Initiation à l’utilisation de Galaxy Cycle "Bioinformatique par la pratique" 2014, INRA Jouy-en-Josas, France Véronique Martin, Sophie Schbath
June 11 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
June 9-10 Informatics on High Throughput Sequencing Data Workshop Toronto, Canada Slides (PDF), PPTX, Video Francis Ouellette
June 2-3 Open (and Big) Data – the next challenge 1st Asian Conference on Open Access Scholarly Publishing, Bangkok, Thailand Slides Scott Edmunds
May 29 Delivering Bioinformatics MapReduce Applications in the Cloud MIPRO 2014. Opatija, Croatia Proceedings Lucas Forer
May 26 Galaxy and kissplice/kissDE tutorials PRABI, Lyon, France Navratil V., Lacroix V
May 19-23 Installing Galaxy Workshop
Application deadline: April 28
GMOD Online Training Carl Eberhard, Amelia Ireland
May 19-21 P048: Optimizing a High-Throughput Workflow for a Rice Genotyping Services Lab PAG Asia 2014, Singapore Maria Ymber V. Reveche
W028: An Open Platform Approach for Management and Analysis of Next-Generation Genotyping Data By Breeders and Geneticists Ramil P. Mauleon
W008: Optimizing a High-Throughput SNP Genotyping Workflow for Rice Improvement Michael J. Thomson
May 19 Initiation au traitement et à l'analyse des données métabolomiques sur la plateforme scientifique web Galaxy IFB-MetaboHUB 8e Journées Scientifiques du RFMF, Lyon, France Réseau Français de Métabolomique et Fluxomique
May 16 Galaxy Initiation Formation en Bioinformatique Plateforme ABiMS, Station Biologique de Roscoff, France Christophe Caron
May 12-14 Short course on RNA-seq and ChIP-seq University of Bergen, Bergen, Norway David Fredman
May 13 Analysis Reproducibility in Data (and Software) Dependent Research NIH BD2K Workshop on Discovering, Citing, Tracking Biomedical Software, Bethesda, Maryland, United States Slides, Video (starting at 19 minutes) James Taylor
May 13 Galaxy Workshop Institute of Genetics and Molecular Medicine (IGMM), Edinburgh, UK Sides Dave Clements
May 12 Galaxy Workshop University of Edinburgh, Edinburgh, UK Galaxy Sides, Edinburgh Genomics Sides
Galaxy Project Update 5th Edinburgh Bioinformatics Meeting, University of Edinburgh, Edinburgh, UK Sides
May 9 Introduction to Galaxy Workshop The Genome Analysis Centre (TGAC), Norwich, United Kingdom Slides
May 6-7 Scaling Galaxy for Big Data NGS Data after the Gold Rush, TGAC, Norwich, United Kingdom Slides
April 29 -
May 1
Three tutorials and at least five talks BioIT World
Boston, Massachusetts, United States
Slides See tutorial and talk list
April 15-17 Globus Genomics Tutorial GlobusWorld, Chicago, Illinois, United States Slides Dina Sulakhe, Alex Rodriguez
Globus Genomics: Enabling high-throughput cloud-based analysis and management of NGS data for Translational Genomics research at Georgetown Slides Yuriy Gusev
Building a Low-budget Public Resource for Large-scale Proteomic Analyses Slides Anoop Mayampurath
April 10 Exploring DNA analyses in the Cloud CRP-Santé, Luxembourg Victoria Dominguez
April 8-9 Building a scalable Galaxy cluster for biomedical research in The Netherlands Netherlands Bioinformatics Conference (NBIC2014), Lunteren, The Netherlands Slides, Abstract David van Enckevort, Anthony Potappel
April 7-9 Formation en bio-informatique "NGS et cancer" Île-de-France, France Vidéos, données test, diapositives
April 6-9 Customized, Reproducible and Accessible Tools for Tandem Proteogenomic-Metaproteomic Analysis US HUPO 2014, Seattle, Washington, United States Poster Tim Griffin
April 3 Métagénique et métagénomique marine : workflows pour l’analyse de données à haut-débit sous Galaxy Congress Biotech Gen2Bio Slides Stéphane Audic, Laure Quintric
e-Biogenouest, vers un Environnement Virtuel de Recherche (VRE) orienté Sciences de la vie ? Slides Yvan Le Bras
April 1 & 3 Galaxy Training University of Melbourne, Australia Agenda with links VLSCI, HABIC, ITS Research
March 26-30 Galaxy toolset for Drosophila genomics
and one-on-one help in the Flybase Demonstrations Room
Drosophila Research Conference, San Diego, California, United States Anton Nekrutenko, Jen Jackson
March 24-25 Galaxy Australasia Workshop 2014 (GAW2014) Melbourne, Australia Slides Organisers
March 17-19 TraIT Hackathon The Hyve, Utrecht, Netherlands Event wiki
March 7 Galaxy Workshop University of Georgia, Athens, Georgia, United States Slides Carl Eberhard, Dave Clements, Dannon Baker, Raj Ayyampalayam
February 26-28 GMOD Malaysia 2014 Kuala Lumpur, Malaysia Slides Amelia Ireland, Dave Clements
February 27 Introduction to NGS Bioinformatics Nowgen Centre, Manchester, United Kingdom Jan Taylor
February 11-13 RNA-Seq & ChIP-Seq analysis course using Galaxy PRABI, Lyon, France Navratil V., Oger C., Veber P., Deschamps C., Perriere G.
February 12-15 Advances in Genome Biology and Technology (AGBT) Marco Island, Florida, United States Anton Nekrutenko, JamesTaylor
February 10-14 Analyse Bioinformatique de séquences pour l'amélioration des plantes Campus la Gaillarde, Montpellier, France Yolande OLIVIER
February 4 Reproducible Web-based bioinformatics: a tutorial on using the Galaxy Web Portal Alberta Children's Hospital, Calgary, Canada Paul Gordon
February 5 RNASeq analysis using the Galaxy Web Portal
February 5-6 Mosquito Informatics EBI, Hinxton, United Kingdom Dan Lawson
February 5-7 Galaxy IFB/MetaboHUB Formation en Bioinformatique Plateforme ABiMS, Station Biologique de Roscoff, France S. Goulitquer
January 28 Galaxy pour l'analyse de données métabolomique Formation en Bioinformatique Plateforme ABiMS, Station Biologique de Roscoff, France S. Goulitquer
January 17 Large-scale multi-omic data integration and analysis: challenges and opportunities 6th Annual BICB Research Symposium, University of Minnesota Rochester, Minnesota, United States Slides Timothy Griffin
January 16-17 2014 GMOD Meeting San Diego, California, United States Links Dave Clements
January 11-15 Galaxy for NGS Data Analysis: A Hands-on Computer Demo Plant and Animal Genome XXII (PAG 2014), San Diego, California, United States Links Dave Clements, Anushka Brownley
Galaxy Cloudman: A Gentle Introduction to Data Analysis on the Cloud
Part of the GMOD Workshop
Dave Clements
Plus 3 more talks and 4 posters See list

2013

Plant and Animal Genome (PAG 2013) Enabling Compute Clusters atop OpenStack @ OpenStack MiniConf, Linux Conf AU, Canberra, Australia] Introduction to Galaxy Boot Camp @ UC Davis Bioinformatics Core ABRF 2013 QFAB Workshops GMOD 2013 Biocuration 2013 Missouri Galaxy Workshop Tour 2013 Great Lakes Bioinformatics Conference (GLBIO) 2013 GalaxyAdmins Meetups Workshop in Next-Generation Sequence Analysis and Metabolomics Bio-IT World Asia 2013 Informatics on High Throughput Sequencing Data Workshop  Galaxy Workshop @ ESHG 61st ASMS Conference  RNA-Seq Analysis Workshop  2013 Galaxy Community Conference (GCC2013) BOSC 2013   ISMB/ECCB 2013   XSEDE13 RDA Second Plenary Meeting The Genomic Bioinformatics Workshop   Individualizing Medicine Conference   Beyond the Genome   Analisi dati Next Generation Sequencing in Galaxy: exome, RNA-Seq, metagenomica   Galaxy Training Days   AMATA early career researcher workshop 2013 South Africa Galaxy Workshop Tour   eResearch Australasia 2013 ASHG 2013 The 8th International Conference on Genomics (ICG-8) NGS解析Galaxy特集とDDBJ Galaxy Day
Date Topic/Event Venue/Location Links Contact
December Galaxy RNA-Seq Analysis: Tuxedo Protocol Hankyong University, Ansung, South Korea Slides (in English)
Video (in Korean)
ChangBum Hong / 홍창범
December 12-16 Web-based Analysis of Next Generation Sequence Data Part of Next Generation Data Analysis Marathon, UC Riverside, Riverside, California, United States slides, exercises, manual Neerja Katiyar, Tyler Backman, Rebecca Sun, Thomas Girke
December 10-14 eBioKit Bioinformatics Workshops The Mikocheni Agricultural Research Institute, Dar es Salaam, Tanzania Etienne P. de Villiers, Erik Bongcam-Rudloff
December 10 Introduction to Next-Generation Sequence Analysis with Galaxy
Session is full but waiting list is open
UC Davis Bioinformatics Bootcamps, Davis, California, United States Workshop Materials UC Davis Bioinformatics Training
December 11 Next-Generation Sequence Alignment and Variant Discovery Workshop Materials
December 12 Genome Assembly using Next-Generation Sequence Data Workshop Materials
December 13 Introduction to the Amazon Cloud for Galaxy and the Command-Line Workshop Materials
December 11 Using Galaxy to Understand Cancer Genomics National Cancer Institute, Rockville, Maryland, United States Slides, Video Jeremy Goecks
December 9 Workshop : An Introduction to De Novo Genome Assembly using Galaxy The University of Queensland, St Lucia, Queensland, Australia Mark Crowe
December 4-6 TAG (Tumor Analysis in Galaxy): a Web Server Application for the Detection of Somatic Mutations in the Absence of Associated Healthy Control Clinical Genomics & Informatics, Lisbon, Portugal Andrew Stubbs
Scalability, Reproducibility and Traceability in Large-Scale NGS Facilities Gianmauro Cuccuru
December 4 Galaxy Day
Les inscriptions au Galaxy Day sont closes
Paris (Institut Curie), France Meeting Report, Slides Organisateurs
November 29 Actualité Galaxy (Galaxy-IFB, GUGGO, Instances dans le GO) Workflows en Bioinformatique, INRIA / IRISA - Campus de Beaulieu, Rennes, France Slides Yvan le Bras, Cyril Monjeaud
Exemple de workflow en biologie marine - "Metabomer: avant/après Galaxy" Sophie Goulitquer
November 22 Variant Detection using Galaxy workshop The University of Queensland, St Lucia, Queensland, Australia Mark Crowe
November 20 November GalaxyAdmins Meetup Online Slides, Screencast Dave Clements, Srinivas Maddhi, Nate Coraor
November 19 NGS解析Galaxy特集とDDBJ including
Galaxy入門とワークフロー構築
数百人規模オミックス解析のための Galaxy 活用術
DDBJ Pipeline の紹介と実習
新潟大学 駅南キャンパス「ときめいと」 Japan All workshop materials お問い合わせの
November 17 Extending the Galaxy portal with parallel and distributed execution capability The Fourth International Workshop on Data Intensive Computing in the Clouds (DataCloud) 2013, Denver, Colorado, United States Paper Ketan Maheshwari
November 10-12 ChemicalToolBoX and its application on the study of the drug like and purchasable space 9th German Conference on Chemoinformatics, Fulda, Germany Xavier Lucas, Björn A Grüning, Stefan Günther
November 6-12 Computational and Comparative Genomics Course
Application Deadline: July 15, 2013
Cold Spring Harbor Laboratory, New York, United States James Taylor
November 6-8 Galaxy Training Days
Workshop is full, but there is space on the waiting list
INRA Auzeville, France Workshop Materials Sarah Maman
November 7 RNA-Seq Analysis using Galaxy workshop Children’s Medical Research Institute, Westmead, New South Wales, Australia Mark Crowe
November 6 Workshop: An Introduction to Variant Detection using Galaxy Children’s Medical Research Institute, Westmead, New South Wales, Australia Mark Crowe
November 6 Galaxy 101 NGS: Introduction to Polymorphism Detection via Variant Analysis
Guest Lecture BME110
University of California, Santa Cruz, United States Live demo & discussion
ucsc-bme110-20131106-actual
Jennifer Jackson
November 2-6 A zebrafish cloud computational resource for environmental health science research 141st American Public Health Association (APHA) Annual Meeting, Boston, Massachusetts, United States Peter Tonellato
November 4 RNA-Seq Analysis using Galaxy workshop The University of Queensland, St Lucia, Queensland, Australia Mark Crowe
October 31 - November 1 Advanced NGS Course: RNA-Seq Data Analysis
This workshop is full
Leiden, The Netherlands Celia van Gelder, Hoen, 't Peter-Bram
October 30 - November 2 Wrangling Galaxy’s reference data Genome Informatics, Cold Spring Harbor Laboratory, New York, United States Dan Blankenberg
Improving reproducibility using automated testing frameworks Dave Bouvier
Galaxy's long-term sustainability—Deployment to the XSEDE system Nate Coraor
Understanding cancer genomes using Galaxy Poster Jeremy Goecks
Finding missing analysis tools with Galaxy ToolShed—A case of mitochondrial RNA modification Anton Nekrutenko
Bioinformatics tutorials using Galaxy Gayle Philip
October 30 - November 1 Using Galaxy for Metabolomics The 8th International Conference on Genomics (ICG-8), Shenzhen, China PDF, PPTX, SlideShare Robert Davidson
"The IRRI Genotyping Service Laboratory Galaxy: Bioinformatics for Rice Scientists" PDF, SlideShare Ramil Mauleon
October 22-26 Introduction to Integrative Analysis with GenomeSpace ASHG 2013, Boston, Massachusetts, United States Michael Reich
High Throughput Data Analysis and Visualization with Galaxy
This workshop is sold out.
Polymorphism Detection and Visualization Anton Nekrutenko, Jennifer Jackson
Poster 1633T: Globus Genomics: Enabling high-throughput analysis and management of NGS data for neurodevelopmental disorders Ravi Madduri, Dinanath Sulakhe, Alex Rodriguez and Paul Dave
And see the Globus Genomics Booth
Poster 1530W: Implementing a High Performance, Reusable Consensus Calling Pipeline for Next Generation Sequencing using Globus Genomics Poster
Poster 1510T: Consensus Genotyper for Exome Sequencing: Improving the Quality of Exome Variant Genotypes Poster
October 21-26 EMBO Practical Course on Analysis of High-Throughput Sequencing Data EMBL-EBI slides Francis Ouellette
October 21-25 NGS Data Analysis and Galaxy Workshop
University of Cape Town
2013 South Africa Galaxy Workshop Tour Slides Dave Clements
October 20-25 Genomics Virtual Laboratory Workshop eResearch Australasia 2013, Brisbane, Australia Mark Crowe, Ron Horst, Andrew Lonie
Image Analysis and Processing in the Clouds using Scalable eResearch Workflow-Based System Workshop Materials Project Team
MILXCloud: A faster, smarter way to process Medical imaging data in the cloud Neil Burdett
Lessons from developing the Genomics Virtual Lab Slides Ron Horst
Early Outcomes of the Characterisation Virtual Laboratory Wojtek Goscinski, Anitha Kannan
The Human Communication Science Virtual Lab Presentation Peter Sefton
October 21-24 ARANGS13: Automated and reproducible analysis of NGS data GTPB, Instituto Gulbenkian de Ciência, Oeiras, Portugal Workshop materials Pedro Fernandes
October 22 Analyzing NGS Data with Galaxy Dana-Farber Cancer Institute, Boston, Massachusetts, United States Galaxy 101 NGS: Introduction to Polymorphism Detection, Managing a Local Galaxy Instance Anton Nekrutenko, Jennifer Jackson, Anushka Brownley
October 14-18 NGS Data Analysis and Galaxy Workshop
University of Pretoria
2013 South Africa Galaxy Workshop Tour Slides Dave Clements
October 13-16 AMATA early career researcher workshop AMATA 2013, Gold Coast, Queensland, Australia Mark Crowe, Annette McGrath
October 9-11 Galaxy Training Days GenoToul bioinformatics facility, INRA, Toulouse Auzeville, France Workshop materials Sarah Maman
October 8-11 Analisi dati Next Generation Sequencing in Galaxy: exome, RNA-Seq, metagenomica CRS4, Loc. Pixinamanna, Pula CA, Italy Paolo Uva
October 7-8 Next-Generation Sequencing Data Interpretation: Enhancing Reproducibility and Accessibility NGS & Bioinformatics Summit Europe, Berlin, Germany Anton Nektutenko
Using Galaxy to Provide a NGS Analysis Platform Slides Hans-Rudolf Hotz
October 4 Galaxy Ecosystem & UCSC
Guest Lecture BME110
University of California, Santa Cruz, United States Slides & Live Demo Jennifer Jackson
October 3 Galaxy 101: NGS Data Analysis
Workshp is full, get on waiting list
University of Minnesota, Minneapolis, United States John Garbe, Getiria Onsongo
October 1-3 RNA-Seq & ChIP-Seq analysis course using Galaxy PRABI, Lyon, France Navratil V., Oger C., Veber P., Deschamps C., Perriere G.
October 1-3 Galaxy as a platform for High-throughput Genomics Beyond the Genome 2013, San Francisco, California, United States Slides Jeremy Goecks
Development of a genomic region database and analysis tool for the Galaxy platform Matloob Khushi
September 30 - October 2 Analysis of Genomic Sequence Data With Galaxy, part of the Cancer Care session Individualizing Medicine Conference, Mayo Clinic, Rochester, Minnesota, United States James Taylor
September 28 - October 1 Galaxy Workshop The Genomic Bioinformatics Workshop, Sydney, Australia Ross Lazarus, Dan Blankenberg
September 27 Enabling Multi-task computation on Galaxy-based Gateways using Swift Science Gateways Institute Workshop, Indianapolis, Indiana, United States Slides Ketan Maheshwariby
September 25-27 RNA-Seq & ChIP-Seq analysis course using Galaxy PRABI, Lyon, France Navratil V., Oger C., Veber P., Deschamps C., Perriere G.
September 16-18 GigaGalaxy: A GigaSolution for reproducible and sustainable genomic data publication and analysis RDA Second Plenary Meeting Poster Scott Edmunds
September 16-20 Bioinformatics Short Course
Registration is full, but there is a waiting list
UC Davis Bioinformatics Core Davis, California, United States Course materials Email
September 12 次世代序列分析平台/ Galaxy (Pre-installed in Bio-Linux) for Next Generation Sequencing 2013 workshop@Life Sci Library: Intelligent Environments of Future Lab for biomedical Research/ 2013 實驗室智慧數位化與次世代生物序列分析平台推廣, Academia Sinica, Taipei, Taiwan Slides 蘇聖堯
September 9-11 RNA-Seq Workshop: From Pipette to P-value! UC Davis Bioinformatics Core Davis, California, United States Course materials Email
July 21-25 Experiences in building a Next-Generation Sequencing Analysis Service using Galaxy, Globus Online, and Amazon Web Services XSEDE13, San Diego, California, United States PDF, PPTX Ravi Madduri
A Sustainable National Gateway for Biological Computation PDF, PPTX Josephine Palencia
Supporting Genomics and other Biological Research Richard LeDuc
National Center for Genome Analysis Support Leverages XSEDE Resources to Support Life Scientists Slides, Paper
July 19-23 ISMB/ECCB, BOSC and MS SIG 2013
Talks, posters and workshops. Lots of them.
Berlin, Germany Slides Galaxy Outreach
July 18-23 Introduction to Galaxy Workshop
National Institute of Environmental Health Sciences (NIEHS)
2013 Research Triangle Workshop Tour, North Carolina, United States Slides Dave Clements
Introduction to Galaxy Workshop
University of North Carolina, Chapel Hill
Slides
Galaxy Installation Tutorial
Introduction to Galaxy Workshop
North Carolina State University
Slides
July 4 RNA-Seq analysis using Galaxy QUT Kelvin Grove Campus, Kelvin Grove, Australia Mark Crowe
July 1-4 A Small Step into Galaxy, a Faster Pace for Metabolomics JOBIM 2013, Toulouse, France Pierre Pericard, Gildas Le Corguillé, Urszula Czerwinska, Marion Landi, Franck Giacomoni, Christophe Duperier, Jean-François Martin, Sophie Goulitquer, Estelle Pujos-Guillot and Christophe Caron
Towards a Life Sciences Virtual Research Environment Slides, Demo Yvan Le Bras, Aurelien Roult, Cyril Monjeaud, Mathieu Bahin, Olivier Quenez, Claudia Heriveau, Anthony Bretaudeau, Olivier Sallou, Olivier Collin
June 30 - July 2 2013 Galaxy Community Conference (GCC2013) University of Oslo, Oslo, Norway Organizers
June 25-28 Galaxy in a Clinical Setting: Architecture and Storage Implications The Clinical Genome Conference, San Francisco, California, United States Sanjay Joshi
June 20-22 W1: Next-generation sequencing data analysis with GenomeSpace and Galaxy FGED Conference, Seattle, Washington Slides Dave Clements
June 21 RNA-Seq analysis using Galaxy Griffith University Nathan Campus, Nathan, Australia Mark Crowe
June 20 RNA-Seq Analysis Workshop
This workshop is sold out.
San Diego Center for Systems Biology (SDCSB), La Jolla, California Tutorial, Slides Chris Benner, Gregory Grant, Harry Birnbaum
June 20 Introduction to RNAseq
This workshop is sold out.
UC Davis Bioinformatics Core Davis, California, United States Workshop material Nikhil Joshi
June 19 Introduction to Galaxy
This workshop is sold out.
Workshop material
June 13-14 Genomics and Epigenomics with Deep Sequencing, the 24th CDB Meeting RIKEN, CDB, Kobe, Japan Anton Nekrutenko
June 9-13 61st ASMS Conference on Mass Spectrometry and Allied Topics
Includes at least 1 workshop and 9 posters either about or utilizing Galaxy
Minneapolis, Minnesota, United States /src/events/asms2013/index.md John Chilton
June 8-11 WS08: Biomedical Data Analysis with Galaxy Workshop European Human Genetics Conference (ESHG2013), Paris, France Anton Nekrutenko, Enis Afgan
June 6-7 Informatics on High Throughput Sequencing Data Workshop Toronto, Ontario, Canada PDF, PPT, Video Francis Ouellette
May 31 Introduction to RNAseq UC Davis Bioinformatics Core Davis, California, United States Workshop material Nikhil Joshi
May 28-31 A Genomics Virtual Lab for Cancer Research Bio-IT World Asia, Singapore Dominique Gorse
Next-Gen Sequencing Analysis Using GigaGalaxy Slides Tin-Lap Lee
Open Source and Web-Based Analysis of NGS Data Using Galaxy at the Center for Research Informatics University of Chicago Jorge Andrade
May 27-30 Galaxy Workshop GenoToul bioinformatics facility, INRA, Toulouse Auzeville, France Slides & Exercises for First step, Reads alignment and SNP calling, RNAseq alignment and transcripts assemblies, sRNAseq Sarah Maman
May 27-29 Course: Genomic Resequencing: Variant Detection and Interpretation in a Diagnostic Context Erasmus MC, Rotterdam, the Netherlands Patrick Koks, NBIC Education
May 24 Introduction to Galaxy Sacramento, California, United States Workshop material Nikhil Joshi, UC Davis Bioinformatics Core
May 23 Fournir des Services de bioinformatique sur le Cloud l'Institut de Biologie de Lille, France Sophie Gallina
May 21
May 29
Initiation à l’utilisation de Galaxy
Les deux ateliers sont maintenant complets
Cycle "Bioinformatique par la pratique" 2013, INRA Jouy-en-Josas, France Sandra Dèrozier, Valentin Loux, Véronique Martin
May 22
May 30
Analyse de données issues de séquenceurs nouvelle génération sous Galaxy
Les deux ateliers sont maintenant complets
Jean-François Gibrat, Valentin Loux, Véronique Martin
May 16-17 Galaxy Workflows for Bioinformatics Analysis, and
Workshop 1A – Galaxy Workflows for Bioinformatics Analysis
Workshop in Next-Generation Sequence Analysis and Metabolomics (WiNGS), UNC-Charlotte, North Carolina, United States James Taylor
May 15 GalaxyAdmins May 2013 Meetup GalaxyAdmins web meetup Slides, screencast Andrew Warren, Srinivas Maddhi, Dave Clements
May 14-16 Tutorial: Exploring and Enabling Biomedical Data Analysis with Galaxy Great Lakes Bioinformatics Conference (GLBIO) 2013, Pittsburgh, Pennsylvania, United States Anton Nekrutenko
April 29 - May 2 Introduction to Galaxy Workshops Washington University in St. Louis Slides Dave Clements
Saint Louis University Slides
University of Missouri Columbia Slides
April 22-26 Using Galaxy to separate potentially functional and benign SNPs Mutation Detection 2013, Lake Louise, Canada Poster Belinda Giardine
April 12 Next generation sequencing data interpretation: enhancing reproducibility and accessibility Reed College, Portland, Oregon, United States Anton Nekrutenko
April 12 Transparent, accessible, reproducible analysis with Galaxy The Genome Analysis Centre (TGAC), Norwich, United Kingdom Slides Dave Clements
April 11 Introduction to Galaxy Workshop Slides
April 9-11 Workshop: Integrated Research Data Management for Next Gen Sequencing Analysis Using Galaxy and Globus Online Software-as-a-Service BioIT World, Boston, Massachusetts, United States Ravi K. Madduri, Alex R. Paciorkowski, Vas Vasiliadis
Talk: Integrated Research Data management and Analysis in NGS using Globus Online, Galaxy and Amazon Web Services Ravi K. Madduri
April 10 Introduction to Galaxy Boot Camp
Registration is full
UC Davis Bioinformatics Core Davis, California, United States Workshop material Nikhil Joshi
April 11 Introduction to RNASeq Boot Camp
Registration is full
Workshop material Nikhil Joshi
April 7-10 GO Galaxy Workshop Biocuration 2013, Cambridge, United Kingdom Galaxy Intro slides, GO Galaxy Slides Dave Clements, Chris Mungall
April 7-8 BOSC/Broad Interoperability Hackathon Cambridge, Massachusetts, United States Brad Chapman
April 5-6 Galaxy Project Update 2013 GMOD Meeting, Cambridge, United Kingdom, immediately prior to Biocuration 2013 Slides Dave Clements
Community Building and Support Slides
Installing Galaxy on the Cloud Workshop Tutorial
March 26-28 RNA Technologies and Analysis Workshop DOE JGI User Meeting Zhong Wang, Len Pennacchio
March 22 Introduction to Variant Detection Using Galaxy QFAB, Brisbane, Australia Mark Crowe
March 19-22 GenomeSpace Tutorial VIZBI 2013, Broad Institute, Cambridge, Massachusetts, United States Michael Reich
March 20 NBIC Galaxy at SURFsara's HPC cloud GalaxyAdmins web meetup Slides, Screencast Hailiang Leon Mei,David van Enckevort
March 18-20 Galaxy High Throughput Genotyping Pipeline for GeneTitan 2013 Summit on Translational Bioinformatics. San Francisco, California, United States Proceedings Oleksiy Karpenko
The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework Proceedings Shannan Ho Sui
March 13 Galaxy Feature Update
UCSC Genome Browser Staff
University of California, Santa Cruz, United States Slides & Live Demo Jennifer Jackson
March 8 RNA-Seq Analysis Using Galaxy QFAB, Brisbane, Australia Mark Crowe
March 5 Galaxy for Biologists Caltech, Pasadena, California, United States Slides Dave Clements
March 2-5 Accessible, Transparent and Reproducible Analysis With Galaxy, part of Galaxy for Core Facilities, part of ABRF 2013
Palm Springs, California, United States
SW1 Workshop slides, W6 Workshop slides Dave Clements
February 4 & 5 Introduction to Galaxy Workshop Johns Hopkins University, Baltimore, Maryland, United States Slides Dave Clements, Mo Heydarian
February 4 Introduction to Galaxy Boot Camp UC Davis Bioinformatics Core Davis, California, United States Tutorial Nikhil Joshi
January 29 Enabling Compute Clusters atop OpenStack OpenStack MiniConf, Linux Conf AU, Canberra, Australia Enis Afgan
January 14-18 Ecole de bioinformatique : Initiation au traitement des données de génomique obtenues par séquençage à haut débit Station Biologique de Roscoff, France Slides and tutorials ecole-bioinfo AT aviesan DOT fr
January 16 Deploying Production Galaxy Environments on OpenStack with CloudBioLinux and CloudMan January GalaxyAdmins Web Meetup Slides
Related Documentation
Video
John Chilton, Srinivas Maddhi, Dave Clements
January 12-16 Galaxy Update 2013 Part of the GMOD Workshop at Plant and Animal Genome (PAG 2013), San Diego, California, United States Slides & Live Demo Jennifer Jackson

2012

Workshop on Genomics  Plant and Animal Genome (PAG 2012)   Reproducible workflows for next generation sequencing analysis   DDBJ   April 2012 GMOD Meeting   Galaxy Tour de France 2012   Informatics on High Throughput Sequencing Data Workshop Galaxy: un environnement d'analyses bioinformatiques Atelier Galaxy ISMB 2012 2012 Galaxy Community Conference Bioinformatics Short Course: Mutation Detection Using Massively Parallel Sequencing: From Data Generation to Variant Annotation 2012 GMOD Summer School South African Genetics and Bioinformatics Society Conference Swiss Galaxy Day Extending High-Performance Computing Beyond its Traditional User Communities Workshop  ASHG 2012 
Date Topic/Event Venue/Location Links Contact
December 17-19 Workflows and the Cloud for Reproducible Bioinformatics ISCB-Asia/SCCG 2012, Shenzhen, China Tavaxy: CBIIT: IRRI: Workflow4Ever: Scott Edmunds, Peter Li
November 28 - December 4 Computaional & Comparative Genomics Course
This was rescheduled due to hurricane Sandy
Cold Spring Harbor Laboratory, New York, United States William Pearson, James Taylor
November 28 GigaDB and Galaxy - revolutionizing data dissemination, organization and analysis International Conference on Genomics & Bio-IT APAC 2012, Hong Kong Slides: PDF, PPTX, Video (starts at 68:20) Peter Li
November 28 RNA-seq workshop HSPH Center for Health Bioinformatics through Harvard Catalyst, The Harvard Clinical and Translational Science Center, Boston, MA, United States Organizer
November 16-17 Analyzing NGS data in a Bioinformatics Core Facility Next Generation Sequencing Congress 2012, London Heathrow, United Kingdom Hans-Rudolf Hotz
November 14 Deploying Galaxy on a Shared-Node Cluster at UAB Galaxy Admins November Web Meetup Slides, screencast Curtis Hendrickson, Srinivas Maddhi
November 6-10 Galaxy 101: Data Integration, Analysis and Sharing American Society of Human Genetics (ASHG), San Francisco, California, United States Slides
Tutorial
Jeremy Goecks, Jennifer Jackson
Working with High-Throughput Data and Data Visualization Tutorial
November 13-15 Analyse des données RNA-seq et ChIP-seq (séquençage haut-débit), à l'aide d'outils orientés vers un public de biologistes PRABI (Pôle Rhône-Alpes de Bioinformatique), Doua de l'Université Claude Bernard - Lyon, Lyon, France Guy Perrière
November 12-14 The Genome Access Course Cold Spring Harbor Laboratory, New York, United States Assaf Gordon
November 11 Deploying Bioinformatics Workflows on Clouds with Galaxy and Globus Provision DataCloud2012 Paper Bo Liu
November 7 Galaxy 101 and RNA-seq Analysis and Visualization QB3 - Computational Genomics Resource Laboratory, Univ of California Berkeley Slides
Tutorials: Galaxy101, RNA-seq
Jeremy Goecks, Jennifer Jackson
October 28 - November 2 Genomic Virtual Laboratory Workshop eResearch Australasia, Sydney, Australia Enis Afgan
October 21-24 RNA seq using Galaxy International Mammalian Genome Conference (IMGC 2012), St. Pete Beach, Florida, United States Slides
October 18-30 Advanced Sequencing Technologies and Applications Course Cold Spring Harbor Laboratory, New York, United States Anton Nekrutenko
October 22 Introduction to Galaxy Workshop Purdue University Slides Dave Clements
October 19 Transparent, Accessible, Reproducible Biological Analysis with Galaxy Indiana University Slides Dave Clements
October 16-17 Introduction to Galaxy Workshop University of Illinois at Urbana-Champaign Slides Dave Clements
October 15-17 Advanced NGS Course: RNA-seq data analysis Amsterdam Medical Centre (AMC), The Netherlands Patrick Koks
October 14-17 Using the Galaxy platform for RNA-Seq data analysis X-meeting 2012, Sao Paulo, Brazil Slides Adhemar Zerlotini Neto, Francisco Pereira Lobo, Felipe Rodrigues da Silva
October 9-11 Tavaxy: A Workflow System with Taverna and Galaxy Capabilities and Cloud Computing Support Bio-IT World Europe, Vienna, Austria Mohamed Abouelhoda
October 8-12 Lessons from Galaxy, a Web-based Platform for High-throughput Genomic Analyses Extending High-Performance Computing Beyond its Traditional User Communities Workshop, part of 8th IEEE International Conference on eScience (eScience 2012), Chicago Illinois, United States Slides Jeremy Goecks
October 3 (first Swiss) Galaxy Workshop SyBIT Tech Day, Bern, Switzerland Links Hans-Rudolf Hotz
September 27-29 Informatics Workshop Beyond the Genome 2012, Harvard Medical School, Boston, Massachusetts James Taylor
September 18-20 Galaxy - a collaborative tool for High Performance Computing NORDUnet Conference, Oslo and Akershus University College, Oslo, Norway Nikolay Vazov
September 11-14 Automated and reproducible analysis of NGS data (ARANGS12) Instituto Gulbenkian de Ciência, Oeiras, Portugal Slides + Exercies Rutger Vos, Darin London
September 11-13 Facilitating Research on Heart Disease through SaaS Bio-IT World Cloud Summit, San Francisco, California, United States Slides Raimond Winslow
September 10-12 Transparent, accessible, reproducible analysis with Galaxy South African Genetics & Bioinformatics Society Conference
University of Stellenbosch, Stellenbosch, South Africa
Slides Dave Clements
Assembling a cassava transcriptome using Galaxy on a high performance computing cluster Slides Aobakwe Matshidiso
September 10-11 Systems Bioinformatics Workshop Institute for Systems Biology
Seattle, Washington, United States
James Taylor
September 3-4 Galaxy Workshop University of Pretoria, Pretoria, South Africa Slides Dave Clements
September 6-7 Stellenbosch University, Stellenbosch, South Africa
August 25-29 http://gmod.org/wiki/2012 GMOD Summer School US National Evolutionary Synthesis Center (NESCent), Durham, North Carolina, United States Tutorial Dave Clements
August 1-3 Bioinformatics Short Course: Mutation Detection Using Massively Parallel Sequencing: From Data Generation to Variant Annotation University of Iowa, Iowa City, United States Slides + Video Iowa Initiative in Human Genetics
July 25-27 2012 Galaxy Community Conference University of Illinois Chicago, United States Program Dave Clements
July 24-27 Suggestions for Galaxy Workflow Design Using Semantically Annotated Services FOIS 2012: 7th International Conference on Formal Ontology in Information Systems, Medical University of Graz, Austria Slides Jie Zheng
July 19 Introduction to Galaxy OpeniHelix Webinar Online OpenHelix
July 13-17 ISMB 2012 and BOSC 2012 Long Beach, California, United States Galaxy @ ISMB, BOSC Galaxy Outreach
July 5-6 Atelier Galaxy Le Centre de Génomique Fonctionnelle Bordeaux Anton Nekrutenko
June 26 Galaxy: un environnement d'analyses bioinformatiques l'Institut de Biologie de Lille, France Sophie Gallina
June 11-12 Informatics on High Throughput Sequencing Data Workshop Toronto, Ontario, Canada Francis Ouellette
June 6-8 Dynamically Scalable, Accessible Analysis with Galaxy Cloud Bio-IT World Asia, Singapore James Taylor
May 30 - June 2 A Galaxy-integrated framework using network graphs to exploit multidimensional data from disparate "Omics" sources for creating/exploiting functional genomics gene sets across multiple species Arthopod Genomics Symposium, Kansas City, Missouri, United States Augustine Dunn
May 28 - June 1 Galaxy Tour de France 2012 Perpignan, Montpellier, Lyon, Paris Nate Coraor, Anton Nekrutenko, JamesTaylor
May 23-25 Opening new gateways to workflows for life scientists IWSG-Life 2012, Amsterdam, The Netherlands Slides Konstantinos Karasavvas
May 17-18 Expression Dynamics of Human XBP1 Revealed using an Integrative Approach (and Galaxy), talk, WiNGS, The Workshop in Next-Generation Sequence Analysis!, UNC Charlotte, North Carolina, United States Slides Jeremy Goecks
Workflows and Galaxy, workshop Slides
May 15-17 RNA-Seq Approach to Study Gene Expression Profiles in Non-Model Organisms Great Lakes Bioinformatics Conference 2012 (GLBIO), Ann Arbor, Michigan, United States Slides Asela Wijeratne, Saranga Wijeratne, Tea Meulia
May 8-12 Staying on top of evolving best practices with Galaxy, Poster The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States Dan Blankenberg
http://gmod.org/wiki/|GMOD in the Cloud Poster Scott Cain
Integrative venomics reveals different infection strategies for parasitic wasps, poster Jeremy Goecks
April 29- May 1 The Genome Access Course Cold Spring Harbor Laboratory, New York, United States Assaf Gordon
April 24-26 Leveraging SaaS for Next-Gen Sequencing: Case Study with the Galaxy Community
Pre-Conference Workshop
Bio-IT World, Boston, Massachusetts, United States Ravi Madduri, Elizabeth Bartom
April 24-25 Galaxy CloudMan on the SARA HPC Cloud, live demo Netherlands Bioinformatics Conference 2012 (NBIC 2012), Lunteren, the Netherlands Poster: Big, A4 Mattias de Hollander
Provenance in Galaxy
Provenance information in bioinformatics workshop
Radek Szklarczyk
April 20 Introduction to Galaxy Iowa State University Slides DaveClements
April 19 Introduction to Galaxy University of Iowa Slides DaveClements, Ann Black-Ziegelbein
April 12-13 Introduction to Galaxy Johns Hopkins University Slides DaveClements
April 11 Introduction to Galaxy University of Maryland Slides DaveClements
April 5-6 http://gmod.org/wiki/April 2012 GMOD Meeting
Including a Galaxy Workshop on evening of April 5
Washington DC, immediately following Biocuration 2012 Project Update, CloudMan Workshop, Community Building lightning talk Dave Clements
April 4-5 NBIC NGS Exome Sequencing & Variant Calling course
Including a session on Read Mapping and Variant Calling with Galaxy
Radboud UMC, Nijmegen Hailiang "Leon" Mei
April 3 Galaxy Bioinformatics Workflow Environment Hogeschool Leiden, Leiden, the Netherlands slides Rutger Vos
January 26 今回の講習会では,「Next-Generation Sequencer(NGS) 微生物解析と Galaxy ツール」を中心に講義と実習を行ないます。講義内容をよりよく理解して 頂くために,PC を使用した実習を行ないます。
(Next-Generation Sequencing (NGS) and microbiological analysis with Galaxy)
DNA Data Bank of Japan (DDBJ), National Institute of Genetics DDBJ
January 8-21 2012 Workshop on Genomics
Features Galaxy and much more.
Český Krumlov, Czech Republic James Taylor
January 14-18 Galaxy Session @ GMOD Workshop,
The Galaxy Platform: Running Analyses in the Cloud @ Cloud Computing Session
... Plus at least 4 more talks and posters
PAG 2012, San Diego, California, United States All talks Dave Clements
Dannon Baker
January 17 Reproducible workflows for next generation sequencing analysis Nowgen, University of Manchester, United Kingdom Tom Hancocks

2011

Date Topic/Event Location Links Contact
November 21-25 Galaxy Workflow System CIBA Course Embrapa, Brazil Felipe da Silva
November 14-15 Using Galaxy to provide an NGS Analysis Platform
as part of the Data Analysis, Management and Storage Strategies Session
Next Generation Sequencing Congress 2011, London, United Kingdom Slides Hans-Rudolf Hotz
November 9-15 Compuational & Comparative Genomics Course
Features Galaxy and much more.
Cold Spring Harbor Laboratory, New York, United States James Taylor
November 8-21 Advanced Sequencing Technologies & Applications Course
Features Galaxy and much more.
Cold Spring Harbor Laboratory, New York, United States James Taylor
November 2-5 Best practices for variant discovery through Galaxy: Oscillating evolution within dual coding genes Genome Informatics 2011, Cold Spring Harbor, New York, United States Dan Blankenberg
October 27 Advanced Analysis: Galaxy pharMAseng, University Hassan II Mohammedia-Casablanca & FST Mohammedia, Morocco OpenHelix
October 25 Exploit your Data: Galaxy and the GMOD Tool Suite
This workshop will both cover Galaxy and provide an overview of the GMOD tool suite.
University of Tasmania, Hobart, Australia Slides Dave Clements
October 23-24 The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool BioVis 2011, Providence, Rhode Island, United States Slides Jeremy Goecks
October 12-14 Galaxy Update and Galaxy Workshop
The workshop will cover an introduction to Galaxy, including analyzing data with tools and visualizations, using Galaxy in the cloud, and running your own instance and adding new tools.
October 2011 GMOD Meeting, Ontario Institute for Cancer Research (OICR), Toronto, Canada Talk slides, Workshop slides Dan Blankenberg
October 9-12 Exploit your Data: Galaxy and the GMOD Tool Suite
This workshop will both cover Galaxy and provide an overview of the GMOD tool suite. This workshop is sponsored by CSIRO and AMATA.
AMATA 2011, Canberra, Australia Slides Dave Clements
October 3-7 Workshop on Genomics
Includes the half-day
Galaxy: Introduction and Introductory Laboratory session
Smithsonian Institution, Washington, DC, United States Anton Nekrutenko
September 22 Developing distributed analysis pipelines with shared community resources using CloudBioLinux and Cloudman AWS Genomics Event, Seattle, Washington, United States Slides Brad Chapman
September 20 Large-Scale Data Movement and High-Throughput Analysis in the Cloud: Case Study with Galaxy Community Bio-IT Cloud Summit, La Jolla, California, United States Slides Ravi Madduri
September 19-22 Transparent, accessible, reproducible analysis with Galaxy Genome Informatics Workshop @ Beyond the Genome 2011, Washington DC, United States James Taylor
September 19 Galaxy for high-throughput NGS analysis MipTec, Next Generation Sequencing for Research and Clinical Genomics User Group, Basel, Switzerland Dan Blankenberg
September 12-20 Bioinformatics and Cloud Computing Courses 2011
This will use Galaxy as a platform throughout the course.
UC Davis, Davis California, United States Dawei Lin
September 15-16 Galaxy: A Web-based Platform for Accessible, Reproducible, and Transparent High-throughput Biology and Galaxy Workshop UAB Research Computing Day, Birmingham, Alabama, United States Talk slides Jeremy Goecks
July 10-23 Workshop on Comparative Genomics North America
Includes a day long Galaxy session
Fort Collins, Colorado, United States Dan Blankenberg
July 17-22 Accessible, Transparent, Reproducible Data Analysis with Galaxy
TeraGrid'11
Salt Lake City, Utah, United States Slides James Taylor
July 15-19 BOSC, 3DSIG, and ISMB / ECCB 2011
Including over 15 talks, workshops and posters related to Galaxy.
Vienna, Austria Slides Galaxy Outreach
June 23-24 Galaxy Workshops @ USC Los Angeles, California, United States Intro talk slides, NGS analyses slides, ISI seminar slides Jeremy Goecks
June 22 Bioinformatics Workshop Mouse Genetics 2011, Washington, DC, United States Carol Bult, Deanna Church
June 9-12 Arthropod Genomics Symposium
Genome Project 101 Workshop
Kansas City, Missouri, United States Workshop page Dave Clements
May 28-31 European Human Genetics Conference 2011 (ESHG)
Galaxy Workshop
Amsterdam, the Netherlands Slides Dave Clements
May 25-26 2011 Galaxy Community Conference
Two full days of Galaxy
Lunteren, the Netherlands Slides, videos Galaxy Outreach
May 20 Using Galaxy Workshop University of Manchester, United Kingdom Dan Blankenberg
April 13-14 NBIC Galaxy Hackathon Belgium/Netherlands NBIC
April 12-14 Dynamically Scalable, Accessible Analysis for High-Throughput Sequence Data
BioIT World
Boston, Massachusetts, United States Enis Afgan
March 5-12 GMOD Americas 2011
Talk and course session
Durham, North Carolina, United States Slides Dave Clements
February 19-22 Galaxy Next Generation Sequencing Functionality from Sample Tracking to SNP Calling
ABRF 2011
San Antonio, Texas, United States Greg von Kuster
February 2-5 Management and Analysis of Second and Third Generation Sequencing Data with Galaxy
AGBT 2011
Marco Island, Florida, United States Slides Anton Nekrutenko, James Taylor
January 15-19 Galaxy: Analyze, Visualize, Communicate
Plant and Animal Genome XIX (PAG 2011)
San Diego, California, United States Slides Dan Blankenberg
January 9-21 Workshop on Comparative Genomics, Europe
Includes sessions on Galaxy
Český Krumlov, Czech Republic Anton Nekrutenko

2010

Date Topic/Event Location Links Contact
November 3-9 Computational and Comparative Genomics
Course includes material on Galaxy
Cold Spring Harbor, New York, United States William Pearson
November 3-4 UCSC Genome Browser and Galaxy Workshops
American Society of Human Genetics (ASHG)
Washington, DC, United States Robert Kuhn
November 2 World Tour of Genome Browsers and Galaxy of Analysis Tools
Pre-ASHG workshop put on by OpenHelix
Washington, DC, United States OpenHelix
October 11-13 The elastic analysis with galaxy on the cloud Beyond the Genome, Boston, Massachusetts Enis Afgan
July 9-13 Galaxy: Analyze, Visualize, Communicate
ISMB 2010
Boston, Massachusetts, United States
July 9-10 Deploying Galaxy on the Cloud BOSC 2010 Boston, Massachusetts, United States Slides Enis Afgan
May 15-16 Galaxy Developer Conference 2010 Cold Spring Harbor, New York, United States
January 9-13 Animal Genomics with Galaxy: Analyze, Publish, and Visualize
Plant and Animal Genome XVIII (PAG 2010)
San Diego, California, United States Slides Dan Blankenberg